Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00397 ATGATCGGGGTTGAAGGCGAGTCTCAACTTCATTTGTTGCCTTTAGACCTCGATTTCGCCACCGGTTGCAACTTAGTAAGGGAATATTGTGTGAAGATGAGTTCTCGGACAGGCAAGGGGCCTGCTGTCAGAAGTTACAGGCGGAGGAAGACAGTTTTGGACTTTGACCTTAACAGTGTACCGGCCGGTGAGAATCGAGAGCAGGAAGGACCTTCAAATCAATCGGGGCCTCGAGAAGTTCAAGCTAACCAGCAACCACAGGTTGTACAACAACCTACAATGATTGATGTGGAGGCCATCGATGACGATGTTGTTGAATCCACCCCGAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAAATCGTCGTGTAAGGACTATAGTTGATGTGGATTTAGAAGATCAGACTAGGATAACCAACAATAATCGCAACAGACGAAGAAGAGGATCCCCAAACCAAACGATTATCAATTGTGATCTTTATATAAATTTGGAAGGCAGTAGCAATTCTAAGAGGGAAAATGTTGAAAAGCCACCTGAGCCTCCAAAAGAGCCTGTCTTCAGCTGTCCAATATGCATGGGCCCTTTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGTGCTCAGGGCAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 738 0.4431 MIGVEGESQLHLLPLDLDFATGCNLVREYCVKMSSRTGKGPAVRSYRRRKTVLDFDLNSVPAGENREQEGPSNQSGPREVQANQQPQVVQQPTMIDVEAIDDDVVESTPRAFAEAKNNSRRNRRVRTIVDVDLEDQTRITNNNRNRRRRGSPNQTIINCDLYINLEGSSNSKRENVEKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00397 245 ProSitePatterns Zinc finger RING-type signature. 205 214 IPR017907 -
Rops3g00397 245 PANTHER ELFLESS, ISOFORM B 33 245 - -
Rops3g00397 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 243 IPR013083 -
Rops3g00397 245 SUPERFAMILY RING/U-box 189 234 - -
Rops3g00397 245 SMART ring_2 190 227 IPR001841 -
Rops3g00397 245 MobiDBLite consensus disorder prediction 58 89 - -
Rops3g00397 245 ProSiteProfiles Zinc finger RING-type profile. 190 228 IPR001841 -
Rops3g00397 245 MobiDBLite consensus disorder prediction 65 89 - -
Rops3g00397 245 Pfam Zinc finger, C3HC4 type (RING finger) 190 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00397 Rops-Chr3 4902432 4911574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00397 44 244 C3H Transcription Factor Family AT5G48655 52.709 1.36e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00397 K22651 - gmx:100792853 307.76