Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00383 ATGCTTCTGGACAAGGATGACATTCAGGAAACCCATTATGAGGCTCTTAATGTCAAGGAAGATGCCAATTATGAAGAAATTCGTGCTAGTTACCGTAGTGCTGTACTCAGTTTACATCCTGATAAGCTATCCAAGACATCCGAAACATCCAGCAGTAATAAAAAAACTGAAGGGAGATTTCTCAAAGTACAAAAGGCATGGGAAATTCTAAGCAATTCAAACTCTCGTTCATTATATGATAATGAGCTGCAAAGTTCAAGGCGGGATGCCTTGGCTGCTGAAGTTGCAGATGATTTAAGCTTACAGGATATGATAGCTGAAGATGCTGAAGAAGCATTGGAACTGTTTTATCAGTGCCGATGTGGTGATTACTTCTCTATAGACTCGATGGAATTGCAGAAAATGGGGTATACCTTGTTCATGGATGGAAATAGGATATCTATACACAATGTTGATACGTTACCAGGATCAGTGATTCTTCCATGTGGATCTTGTTCGTTAAAAGCTCGTCTCATAATTAGTGTGGATGAGAATTGA 537 0.3929 MLLDKDDIQETHYEALNVKEDANYEEIRASYRSAVLSLHPDKLSKTSETSSSNKKTEGRFLKVQKAWEILSNSNSRSLYDNELQSSRRDALAAEVADDLSLQDMIAEDAEEALELFYQCRCGDYFSIDSMELQKMGYTLFMDGNRISIHNVDTLPGSVILPCGSCSLKARLIISVDEN* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00383 178 Gene3D DPH Zinc finger 88 178 IPR036671 -
Rops3g00383 178 Gene3D DnaJ domain 2 87 IPR036869 -
Rops3g00383 178 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Rops3g00383 178 SMART dnaj_3 10 75 IPR001623 -
Rops3g00383 178 PRINTS DnaJ domain signature 55 75 IPR001623 -
Rops3g00383 178 PRINTS DnaJ domain signature 13 31 IPR001623 -
Rops3g00383 178 PRINTS DnaJ domain signature 31 46 IPR001623 -
Rops3g00383 178 Pfam CSL zinc finger 97 172 IPR007872 -
Rops3g00383 178 SUPERFAMILY CSL zinc finger 95 176 IPR036671 -
Rops3g00383 178 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 174 IPR007872 -
Rops3g00383 178 Pfam DnaJ domain 11 80 IPR001623 -
Rops3g00383 178 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Rops3g00383 178 PANTHER DPH3 HOMOLOG-RELATED 11 175 IPR044248 GO:0017183|GO:0046872
Rops3g00383 178 CDD DnaJ 11 72 IPR001623 -
Rops3g00383 178 FunFam DNAJ heat shock N-terminal domain-containing protein-like 89 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00383 Rops-Chr3 4775117 4781064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00383 12 80 C2H2 Transcription Factor Family AT1G74250 37.681 1.69e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00383 K17867 - gmx:100814856 276.944