LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g00374	ATGCTGAGAGAGAGCGTAACAAAGCAAGTAGAGGCACGATCTTCTCCTAAGTTCTATTATCTGAAACTCAACTCAACGCTTGTCTCGCACATTCTTTCGCTCCCTCTTTTACCGTCTTATGGCCTAAACTCTGACCTCGCTCTCTCCCCATCACCAAACCCAAAAAGCACGGTAATAGTTGGAGAAAGGCAGCCAAGATTCTCTGATCCTTCATGCTTTCAATCTTTGTCCCCTAAGACCACCGTGAAAGAATATGCTTCACATGGCAGTATCATTAGAAGACATCTTTTAGGTTCAGATTCATCTAGGCATGCTTCATCTAGAAATAGTTTTACTGGTCTGGACAAAAGGCCTAGTTTGTGTCTTAAGAGTACTCAGTCACATGCTTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGAATAAACATGTACATGTTAATGATGGAGTGAACTTTGACAAGGGACAGAATCGACAAAAGAAGTCTGGGGAAGATGTTAAGTACTACAATACACATGCACAACTTGGAGAACAGGATCAAGAGGAATGGCTTAATAATGAGAAGCTTGCCATAGAAAGTAAAAAGAGAGAATCACCGTTTTTGACCAGAAGGGATAAGTTTAAAAATGAGTTTCTGAGAAGAATCGTTCCTTGGGAGAAAATAAACATTTCTTGGGATACATTTCCTTATCACATTCATGAGCATACCAAAAATCTTCTTGTGGAATGTGCTGCTTCCCATTTGAGACAAAATAAGTTTGCTTCATCTTTTGGCACTCGTCTCGCATCTTCAAGTGGAAGAATATTGCTTCAGAGCGTTCCTGGAACTGAGCTCTATCGTGAGAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTTTGTTGGTGCTTGATAGCAGCATCCTTGCTCCTTACGATATTGATGATGATTTATCGTCAGACTACGAGTCTGATGATGATAATATGGAATCTGGGGAGGAGGGTTCTCTGGAGTCAGAGAATGAGGATGATAACGATGCTAATAATGAAGAAGAATGGACTAGCAGTACTGAAGCGAAGTCAGATGCAAGTGATCATGAAGATGCACTAGCATCTGCTGAAGCAGCCCTTAAGAAGGTTAAAGCGGCCGTTCAGAAACTTGTCCCTTACAACATGGAAGAATTTGAAAAGGTAACGTCTGGGGAATCTGAGAGTTCTGAGTCGTCCAAGTCTAATGATGCCAAGTCTTCTGATAAATCGGGATGTCAGCTAAGAAAAGGTGACCGTGTGAAATACATTGGGCCATCTGTTCGAGTTGCAGCTGATGATAGGCCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTCATCTTGGATATTAATGAAGATAGGGCCAATGAGGTTGAGGTGGAGAACCTTAATAACAATCATACAAAACCACCAATTTATTGGATACACGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGCATTCCAAACAACCTCTTATTGTCTATTTTCCAGACAGTTCACAGTGGTTGCATAAATCAGTTCCTAAGTCAAACCGAAATGAGTTTTTTCATAAGGTCGAGGAGATGTTTGACCAGTTATCTGGCCCCGTAGTATTGATTTGTGGGCAAAACAAGGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACAATGATACTTCCAAACTTTGGACGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCGTTTGACTGAGGGATATAAAGGGGAAAAGACATCAGAAGATGACGAAATTAACAAGCTCTTCTCTAATGTTTTGTCTATGCATCCACCCAAGGATGAGAATTTACTGGTAACATTCAAGAAACAACTTGAGGAAGACAGGAGAATTGTGATTTCACGTAGTAATTTGAACGAACTACGGAAGGTTCTCGAAGAACATCAGCTATTATGCGTGGACCTCTTGCATGTAAATACTGATGGCATCATTTTGACAAAGCAAAAAGCTGAAAAAGTTGTAGGGTGGGCCAAAAATCATTACTTGTCATCATGCCTGCTTCCTTCTATTAAAGGAGAAAGGTTGTGCCTTCCTCGTGAAAGTCTTGAAATTGCAATCTCAAGGTTGAAGGGCCTGGAAACTATGTCACGGAAACCTTCTCAGGGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGTAATTTCATTTCATCTGTCGTACCTCCTGGTGAAATTGGGGTGAAGTTCGATGACATTGGTGCTCTTGAAGATGTAAAGAAGGCACTTCATGAACTTGTTATTCTTCCAATGAGAAGGCCTGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTGCTTTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTGGCTAAGGCACTTGCAACCGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGCGCTTTTGAGCATGAGGCCACTAGGCGAATGAGGAATGAGTTCATGGCAGCATGGGATGGATTGAGGTCGAAAGAAAATCAAAGAATACTCATTCTTGGTGCAACAAACCGGCCGTTCGACCTTGATGATGCTGTTATTCGTCGCTTACCGAGAAGGATATATGTCGATTTACCAGATGCTGAAAATCGAATGAAGATTTTGAGAATATTTCTTACACAAGAAAATTTGGATCCCAATTTTCAGTTTGATGAACTTGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTATGTATTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGAAGGGAGGCAATAATGGTACAACTTCGGTATTAAGGCCTCTTAATTTGGATGATTTTGTTCAGTCAAAATCCAAGGTGGGTCCATCAGTTGCATATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTATGGAGAAGGTGGTAGTAGGACTAAATCACCATTTGGATTTGGGAGCTGA	3168	0.4129	MLRESVTKQVEARSSPKFYYLKLNSTLVSHILSLPLLPSYGLNSDLALSPSPNPKSTVIVGERQPRFSDPSCFQSLSPKTTVKEYASHGSIIRRHLLGSDSSRHASSRNSFTGLDKRPSLCLKSTQSHAYSSESDGRNASENKHVHVNDGVNFDKGQNRQKKSGEDVKYYNTHAQLGEQDQEEWLNNEKLAIESKKRESPFLTRRDKFKNEFLRRIVPWEKINISWDTFPYHIHEHTKNLLVECAASHLRQNKFASSFGTRLASSSGRILLQSVPGTELYRERLVRALAQDLQVPLLVLDSSILAPYDIDDDLSSDYESDDDNMESGEEGSLESENEDDNDANNEEEWTSSTEAKSDASDHEDALASAEAALKKVKAAVQKLVPYNMEEFEKVTSGESESSESSKSNDAKSSDKSGCQLRKGDRVKYIGPSVRVAADDRPLTNGQRGEVYEVNGDRVAVILDINEDRANEVEVENLNNNHTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLHSKQPLIVYFPDSSQWLHKSVPKSNRNEFFHKVEEMFDQLSGPVVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRLTEGYKGEKTSEDDEINKLFSNVLSMHPPKDENLLVTFKKQLEEDRRIVISRSNLNELRKVLEEHQLLCVDLLHVNTDGIILTKQKAEKVVGWAKNHYLSSCLLPSIKGERLCLPRESLEIAISRLKGLETMSRKPSQGLKNLAKDEFESNFISSVVPPGEIGVKFDDIGALEDVKKALHELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLTQENLDPNFQFDELANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGGNNGTTSVLRPLNLDDFVQSKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGS*	1056

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g00374	1055	MobiDBLite	consensus disorder prediction	348	365	-	-
	Rops3g00374	1055	MobiDBLite	consensus disorder prediction	391	417	-	-
	Rops3g00374	1055	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	760	982	IPR027417	-
	Rops3g00374	1055	Pfam	ATPase family associated with various cellular activities (AAA)	802	932	IPR003959	GO:0005524\|GO:0016887
	Rops3g00374	1055	Coils	Coil	358	378	-	-
	Rops3g00374	1055	Gene3D	-	761	1037	IPR027417	-
	Rops3g00374	1055	Pfam	AAA+ lid domain	956	990	IPR041569	-
	Rops3g00374	1055	SMART	AAA_5	798	935	IPR003593	GO:0016887
	Rops3g00374	1055	MobiDBLite	consensus disorder prediction	311	346	-	-
	Rops3g00374	1055	MobiDBLite	consensus disorder prediction	137	164	-	-
	Rops3g00374	1055	ProSitePatterns	AAA-protein family signature.	905	924	IPR003960	GO:0005524\|GO:0016887
	Rops3g00374	1055	MobiDBLite	consensus disorder prediction	125	164	-	-
	Rops3g00374	1055	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	207	1048	-	-
	Rops3g00374	1055	MobiDBLite	consensus disorder prediction	311	365	-	-
	Rops3g00374	1055	Gene3D	-	934	1019	-	-
	Rops3g00374	1055	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	760	936	-	-
	Rops3g00374	1055	MobiDBLite	consensus disorder prediction	392	417	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g00374	Rops-Chr3	4640624	4660437	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g00374	796	997	Calmodulin-binding Proteins	AT3G56690	36.058	2.96e-32	134

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g00374	-		-	gmx:100812718	1665.97