Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00373 ATGGGCAAGTCAAGCAAGAAATCAGCTACCAAAGTCGATGCTGCTCCAGCTGTTGTTCCACCATCAAAGTCTGCCAAAAAAGGCAAGAGGCAGGCTGATGAGGAACTCAAGAAACAAGTGAGTGCAAAGAAGCAGAAGATAGAAGAGGTTGCCCAGAAGCAGAAAAAGGAAGCTAAGGTGCAAAAAAATAAGAAGGAAAGTAGTTCAGATGATTCTTCATCTGAATCTGAAGATGAGAAACCTGCTGCAAAAGTTGCTGTTCCATCAAAAAAGACACCAGCTAAAAATGGCACTCTTAGTACACCAGCAAAGAAAGCCAAGCCAGATACCAGTTCCAGTTCTTCTGATGACTCCTCTGATGAGGATCAAGTGGGTGTTGCGAAGCAAAAGAAAGAAGAGGTTGCTGCGAAGCAAAAGAAGCAAGCAAAAGTGCAAAAGAAGGAAAGTAGTTCAGATGATTCTTCAGAATCTGAAGATGAGAAACCTGCAGCAAAAGTTTCTGCTGCTTCAAAAACTCAACCTGCTAAAAATGGGAGTACCCCTGCAAAGAAAGGAAAGCCAGCTACCAGTTCTTCTGAATCCTCGGATGATGACTCCTCGGATGAGGATGAAGCTCCAAAATCCAAGGTGGTGCCTGCTGCAGGTAAGAATGGACCTGCTTCTACTAAGAAAATTCAGCCAAGTGAAAGCTCTGACAGTGATAGCTCAGAGTCTGATTCTGATAGCAGCTCTGACGAGGACAAAGTAACTAAATCATCCAAGAAGTTGCCTGCTGCTGCTGGTCTTGGTAAAAATGTGCCTGCCAAGAAGGTTGATTCAGATTCAACCTCCGATAGTAGCTCAGATGAAGATGATAATAAGAAAAAACCAGCAGCTGCTTTGTCCAAAAAGCTGCCTACATCTACAGTTGCTCCAAGTAAGAAAGTTGAGACCCGTGGAAGCTCAGATGACGAATCAAGTGAAAGCTCTGATGAAGATGAAGATCCCAAGCCTAAGGTAACTGCTGCGTCCAAGCCTTCTGCTGTTGCAAAAAAGAACGTTGATAGCTCAGATTCTGATGATGATAGCAGTTCTGAGGAAGACAATAAGAAAAAGATGGATATTGATGAGGACAGTTCTGATGAAAGTGATGAAGAGCCGCAAAAGAAAAAGCCTGTGAAAGCTTCAAAAGAAAGCAGTGATAGTTCAGAGGACAGTGAAGAGGAAGATGAGGAGAAACCCTCCAAAACTCCTCAGAAAAAAGTTAAGGATGTGGAGATGGTTGATGCTGCCTCATCGGGAAAGAAAGCTCCTAATACCCCTGCTACACCGAAAGATCAAACTGAAACTTCGAAGACTCTATTTGTTGGAAACTTGTCATTTAATGTTCAACGAACTGATGTGGAAGATTTCTTCAAAGATTGTGGAGAGGTTGTTGATGTCCGTCTTGCTTCGGATGATACTGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAGGCAGCCCAAAATGCACTTGAGTTGAATGGACAGGAATTGTTGCAACGTGCTGTCCGGCTTGATTTAGCTCGGGAAAGGGGTGCATACACCCCCAGTACTGGCAACTGGAACAACTCATCCCAGAATAGTGGAAAAGGCCAGTCTCAAACATTATTCGTAAAGGGTTTCGATAGTTCCCTTGGGGAAGATGAGATAAAAGCTAGTCTGCAGGAGCATTTTGGTTCTTGTGGGGAAATTACCAGGATATCAGTTCCGAAAGATTATGATTCTGGTGCTAGCAAGGGGTTTGCTTACATGGACTTCAATGATGCTGATAGCTTCAATAAAGCTCTAGAACTTCATGAAACTGAACTTGGAGGTTATACATTGTCAGTGGATGAAGCTAAACCTAGAGGTGATAATCAAGGTTCAGGGGGTAGAGGTGCAGGTGGAAGGAGCGGTGGTGGTCGATTTGGTGGAAGGAGTGGTGGTGGCCGATTTGGTGGAAGCGGTGGTGGCCGATTTGGTGGAAGCGGTGGTGGCCGAGGTCGATTTGGTGGAAGAGATGGCGGTGGCAGAGGTGGTCGAGGAAGAGGTGGCAGAGGTGGTTGGGGAACACCAAATAAACCCAGCCTTGCTGCAGAAGGCACAGGGAGAAAGACCACTTTCGCTGATGACGACTAA 2151 0.451 MGKSSKKSATKVDAAPAVVPPSKSAKKGKRQADEELKKQVSAKKQKIEEVAQKQKKEAKVQKNKKESSSDDSSSESEDEKPAAKVAVPSKKTPAKNGTLSTPAKKAKPDTSSSSSDDSSDEDQVGVAKQKKEEVAAKQKKQAKVQKKESSSDDSSESEDEKPAAKVSAASKTQPAKNGSTPAKKGKPATSSSESSDDDSSDEDEAPKSKVVPAAGKNGPASTKKIQPSESSDSDSSESDSDSSSDEDKVTKSSKKLPAAAGLGKNVPAKKVDSDSTSDSSSDEDDNKKKPAAALSKKLPTSTVAPSKKVETRGSSDDESSESSDEDEDPKPKVTAASKPSAVAKKNVDSSDSDDDSSSEEDNKKKMDIDEDSSDESDEEPQKKKPVKASKESSDSSEDSEEEDEEKPSKTPQKKVKDVEMVDAASSGKKAPNTPATPKDQTETSKTLFVGNLSFNVQRTDVEDFFKDCGEVVDVRLASDDTGRFKGFGHVEFATAEAAQNALELNGQELLQRAVRLDLARERGAYTPSTGNWNNSSQNSGKGQSQTLFVKGFDSSLGEDEIKASLQEHFGSCGEITRISVPKDYDSGASKGFAYMDFNDADSFNKALELHETELGGYTLSVDEAKPRGDNQGSGGRGAGGRSGGGRFGGRSGGGRFGGSGGGRFGGSGGGRGRFGGRDGGGRGGRGRGGRGGWGTPNKPSLAAEGTGRKTTFADDD* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00373 716 Coils Coil 127 148 - -
Rops3g00373 716 CDD RRM1_NUCLs 446 522 IPR034349 -
Rops3g00373 716 MobiDBLite consensus disorder prediction 429 444 - -
Rops3g00373 716 FunFam Nucleolin 2 419 529 - -
Rops3g00373 716 MobiDBLite consensus disorder prediction 377 394 - -
Rops3g00373 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 447 514 IPR000504 GO:0003723
Rops3g00373 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 547 619 IPR000504 GO:0003723
Rops3g00373 716 MobiDBLite consensus disorder prediction 347 370 - -
Rops3g00373 716 MobiDBLite consensus disorder prediction 526 544 - -
Rops3g00373 716 FunFam Nucleolin 2 530 668 - -
Rops3g00373 716 SMART rrm1_1 446 517 IPR000504 GO:0003723
Rops3g00373 716 SMART rrm1_1 546 622 IPR000504 GO:0003723
Rops3g00373 716 Coils Coil 33 64 - -
Rops3g00373 716 CDD RRM2_NUCLs 546 624 IPR034350 -
Rops3g00373 716 Gene3D - 528 665 IPR012677 -
Rops3g00373 716 SUPERFAMILY RNA-binding domain, RBD 532 656 IPR035979 GO:0003676
Rops3g00373 716 MobiDBLite consensus disorder prediction 26 85 - -
Rops3g00373 716 MobiDBLite consensus disorder prediction 275 292 - -
Rops3g00373 716 SUPERFAMILY RNA-binding domain, RBD 434 540 IPR035979 GO:0003676
Rops3g00373 716 MobiDBLite consensus disorder prediction 170 194 - -
Rops3g00373 716 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 46 590 - -
Rops3g00373 716 MobiDBLite consensus disorder prediction 524 544 - -
Rops3g00373 716 MobiDBLite consensus disorder prediction 121 165 - -
Rops3g00373 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 545 626 IPR000504 GO:0003723
Rops3g00373 716 Gene3D - 433 526 IPR012677 -
Rops3g00373 716 MobiDBLite consensus disorder prediction 405 423 - -
Rops3g00373 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 521 IPR000504 GO:0003723
Rops3g00373 716 MobiDBLite consensus disorder prediction 618 716 - -
Rops3g00373 716 MobiDBLite consensus disorder prediction 1 444 - -
Rops3g00373 716 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00373 Rops-Chr3 4631661 4638860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00373 433 597 Eukaryotic Initiation Factors Gene Family AT1G22760 30.723 1.38e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00373 K11294 - gmx:100786132 567.385