Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00354 ATGGCCACTTTCTGTACCTCACTCTTTTACTGTCTCTTCCTCCTCACCACCGTGGTTGTTGCCACCGGAAGAGAACATTCCGGCGAAGAAACACCACAACAGGAAGCTGATAGAGTGAAGAACTTGCCGGGACAGCCACCAGTGAAATTCAGACACTATGCTGGTTACATAAAGCTAAGACCCCATGAAGAGAAGGCCTTGTTTTATTGGTTCTTTGAAGCTCAAGAAGCACCCTCACACAAACCTCTTGTGCTTTGGCTTAATGGAGGACCTGGTTGCTCATCCGTTGGCTATGGAGCTGCACGAGAGCTTGGTCCATTTCTTGTTGAAGACAAAGAACGCCTCAAACTTAACAAATTCTCTTGGAACAAAGTTGCAAATATCATATTCTTGGAGTCACCAGTTGGTGTTGGCTTCTCTTACACTAACAATTCCAAAAATTTACATGAGCTTGGGGATCGAGTTTCTGCTATTGATAACTATGCCTTCTTGATTGGTTGGTTCAAAAGGTTTCCAAGCTTCAAATCCCACGAATTTTATATTGCAGGAGAGAGCTATGGAGGGCATTATGTTCCACAGCTTGCTGAGCTCATCTATGAAGGAAACAAAGATACCAAAAAGGGCTCTTACATAAATCTCAAGGGATTCATGGTGGGAAATGCTGTGATGAATGATCTTACTGACATAAAAGGCTTGATTGATTATGCTTGGAGCCATGCCATTATCTCAGACCAAGTATATCATGGGATAGTCAAAGATTGTGACTTTGGTAAAGAAAACCAAACAAGGGCTTGCGATTTGCATGTTGCAGGATTATTAGAAGCTTACTCCGATATTGACATATATAGCATTTATTCACCCATTTGCCTCGATAACTATCCAAGAAGAGTTTCAGCCAAACTTGTCGTTGCTCCTCATTTTCTCACACGACATGACCTGTGGCATACGCTACCATCAGGATACGATCCGTGTACCGAGGATTATGTAGGCAAATATTTCAACAATAAGGATGTTCAGAAGGCCCTACATGCCAACATCACCAACTTGTCATATCCCTATACCCTTTGCAGCAATGTAATTCAGAAATGGAACGACTCACCAAACACAGTTCTGCCGGTTGTTCGGAAGCTCCTAGACGCGGGTTTACGCATTTGGATCTTCAGTGGGGACACAGATGGTAGAGTTCCAGTGACATCAACAAGATACAGCATAAACAAGATGGGTTTGAAAATAAGAAAAGGGTGGAGAGCTTGGTATCACAAGCATCAAGTGGCAGGGTGGATGGAAGTGTATGAGGGTGGTCTCACTTTTGCAACCATTAGAGGTGCTGGTCACCAAGTCCCTGTCTTTGCACCACAACAGTCCCTTTCTCTTTTCACCCATTTCATCTCTTCTCAAACCCTCCCAGCTTCTCGCTTCTAG 1422 0.4367 MATFCTSLFYCLFLLTTVVVATGREHSGEETPQQEADRVKNLPGQPPVKFRHYAGYIKLRPHEEKALFYWFFEAQEAPSHKPLVLWLNGGPGCSSVGYGAARELGPFLVEDKERLKLNKFSWNKVANIIFLESPVGVGFSYTNNSKNLHELGDRVSAIDNYAFLIGWFKRFPSFKSHEFYIAGESYGGHYVPQLAELIYEGNKDTKKGSYINLKGFMVGNAVMNDLTDIKGLIDYAWSHAIISDQVYHGIVKDCDFGKENQTRACDLHVAGLLEAYSDIDIYSIYSPICLDNYPRRVSAKLVVAPHFLTRHDLWHTLPSGYDPCTEDYVGKYFNNKDVQKALHANITNLSYPYTLCSNVIQKWNDSPNTVLPVVRKLLDAGLRIWIFSGDTDGRVPVTSTRYSINKMGLKIRKGWRAWYHKHQVAGWMEVYEGGLTFATIRGAGHQVPVFAPQQSLSLFTHFISSQTLPASRF* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00354 473 ProSitePatterns Serine carboxypeptidases, histidine active site. 435 452 IPR033124 GO:0004185
Rops3g00354 473 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Rops3g00354 473 FunFam Carboxypeptidase 33 291 - -
Rops3g00354 473 Pfam Serine carboxypeptidase 43 464 IPR001563 GO:0004185|GO:0006508
Rops3g00354 473 FunFam Carboxypeptidase 370 465 - -
Rops3g00354 473 Gene3D - 370 464 - -
Rops3g00354 473 Gene3D alpha/beta hydrolase 33 290 IPR029058 -
Rops3g00354 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 452 IPR001563 GO:0004185|GO:0006508
Rops3g00354 473 SUPERFAMILY alpha/beta-Hydrolases 34 469 IPR029058 -
Rops3g00354 473 FunFam Carboxypeptidase 320 468 - -
Rops3g00354 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Rops3g00354 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Rops3g00354 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Rops3g00354 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Rops3g00354 473 Gene3D - 324 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00354 Rops-Chr3 4415870 4422228 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00354 329 468 Calmodulin-binding Proteins AT2G22960 30.496 5.04e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00354 K16297 - gmx:100799746 818.92