Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00350 ATGGCTTTGTGTTCAGTTATTTTCAATCTTCTTCTATCTGTTGTACTTCTTATCTGTTTCACCAAAGAAGCTTTTGGTGCGTCAAACAGTCACCTTAGCCGTGAGGTACTAGCACAGCAAGAAGCTGATAGAGTGTATAGACTACCAGGGCAGCCTGTGGTGAAGTTTAATCAATATGCGGGTTATATCACAGTCAATGAGACTCATGGAAGAGCACTGTTCTATTGGTTCTTTGAGTCCACTGAGAAACCAGAAGAAAAACCTGTTCTCCTTTGGCTCAATGGAGGCCCTGGATGTTCCTCAATTGGTTATGGAGAAGCGGAGGAGCTAGGACCCTTCTTTCCCCAGAACAGCAGCCAACCAAAGTTAAAGTTGAACCCTAATTCTTGGAATAAAGCTGCAAATCTTTTATTTCTGGAATCCCCTGTTGGAGTGGGATTCTCCTACACCAACACCAGCAGTGATATAAGTGAGCTTGGTGACACCATTGCTGCTAAGGATTCACACACCTTTCTCATCAATTGGTTTAGAAGATTTCCACAATTCAGATCACACGAGTTCTACATTGCAGGTGAAAGCTATGCAGGGCACTATGTTCCACAACTTTCTGAGCTCATTTTCGATAATAATCATAATCCTTCAAAGGAAGACTACATTAACTTCAAAGGGTTCATGATTGGAAATGCACTATTGGATGATGATACAGATCAAAAGGGTATGATAGATTATGCGTGGGATCATGCTGTGATATCTGATGGTTTATACCATAACATCACTACCAAATGCGACTTCAGCCTTCCAAATCAAACAAATGACTGCAATGTGGAACTCAATAAGTACTTCGATGTGTATAGTATTATTGACATGTATAGCTTGTACGCTCCCAGGTGTTTCAGCAACAACAGCAATGTCAGAAGAGAAGCCCCTGTTGTCAAAGGCGTAGCCCCTCATTCTTTTTCCAAACTTGATGGTTGGCATAAAAAACCAGCTGGATATGATCCATGTGCATCGGATTATACTTATGTGTACCTAAATACGCCAGAAGTTCAAAAGGCACTGCATGCCAATACCACCAAAATTCCCTATCCATGGGTTCACTGCAGCAATAATATCACATTTTGGAATGATGCACCACAATCCATGCTTCCTGTACTCAAGAAGCTAATTGCCGGTGGTATACGCATATGGGTTTACAGTGGAGATACCGATGGAAGAATTCCTGTGACTGCAACAAGATATACACTAAGAAAACTGGGGCTCAATATTGTTGAAGATTGGACTCCTTGGTATACCAGCCGGCAGGTGGGAGGATGGACCATTGTATATGATGGGCTAACTTTTGTGACCATAAGAGGTGCTGGTCATCAGGTTCCTACTTTCGCTCCCAAACAAGCTCTTCAGCTAGTTCGACACTTCTTAGTCAATAAGAAATTACCACATCAACCAATTTAA 1452 0.4187 MALCSVIFNLLLSVVLLICFTKEAFGASNSHLSREVLAQQEADRVYRLPGQPVVKFNQYAGYITVNETHGRALFYWFFESTEKPEEKPVLLWLNGGPGCSSIGYGEAEELGPFFPQNSSQPKLKLNPNSWNKAANLLFLESPVGVGFSYTNTSSDISELGDTIAAKDSHTFLINWFRRFPQFRSHEFYIAGESYAGHYVPQLSELIFDNNHNPSKEDYINFKGFMIGNALLDDDTDQKGMIDYAWDHAVISDGLYHNITTKCDFSLPNQTNDCNVELNKYFDVYSIIDMYSLYAPRCFSNNSNVRREAPVVKGVAPHSFSKLDGWHKKPAGYDPCASDYTYVYLNTPEVQKALHANTTKIPYPWVHCSNNITFWNDAPQSMLPVLKKLIAGGIRIWVYSGDTDGRIPVTATRYTLRKLGLNIVEDWTPWYTSRQVGGWTIVYDGLTFVTIRGAGHQVPTFAPKQALQLVRHFLVNKKLPHQPI* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00350 483 Gene3D - 381 474 - -
Rops3g00350 483 Gene3D alpha/beta hydrolase 39 299 IPR029058 -
Rops3g00350 483 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 462 IPR001563 GO:0004185|GO:0006508
Rops3g00350 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Rops3g00350 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Rops3g00350 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 139 149 IPR001563 GO:0004185|GO:0006508
Rops3g00350 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 138 IPR001563 GO:0004185|GO:0006508
Rops3g00350 483 ProSitePatterns Serine carboxypeptidases, histidine active site. 445 462 IPR033124 GO:0004185
Rops3g00350 483 ProSitePatterns Serine carboxypeptidases, serine active site. 189 196 IPR018202 GO:0004185
Rops3g00350 483 FunFam Carboxypeptidase 39 299 - -
Rops3g00350 483 Pfam Serine carboxypeptidase 50 474 IPR001563 GO:0004185|GO:0006508
Rops3g00350 483 Gene3D - 335 371 - -
Rops3g00350 483 FunFam Carboxypeptidase 381 475 - -
Rops3g00350 483 SUPERFAMILY alpha/beta-Hydrolases 40 479 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00350 Rops-Chr3 4354975 4362050 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00350 343 478 Calmodulin-binding Proteins AT2G22960 29.927 9.90e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00350 K16297 - gmx:100781503 845.499