Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00346 ATGGCAGATAGCGTAGTTGGCTTTCTTTTAGAAAACTTGTCCCAGCTGCTAGCACACGAAGCTAAGTTGCTTTGTGGCGTGGAGGATGGAATCAGATCCCTCCACAACGAGCTCGAATTGATAAACGTCTACCTCAAAATCTCCGAGGGGAAGAAGAGCAAGAACGAGATAGAACAAAAAGTTGTGAGTCATATCAGAGATGTCGCCCAAGTAGCCGAGGATGTTGTCGACACATTCATCGCCAACGTTGCCATGCACAAGAGGAGGAGCAAGCTGGGGAGAATGCTCCATAGCGTTGACCATGCAAAGTTGCTCCACGAAGTAGCTGAGAAAATAGACAAGATAAAAACCACAATCGTGGAGATACGTGACAACAAGATCAAATATGACTTCCCAGAAAGCAGTGATCAAGCAAGAGAAGAGGAGGAGAGGGTGCAGTTCCTGCATAAGCGAAGAAGAAACGTGGAGGAAGAAGATGTAGTGGGCTTTGTCCATGACTCCAAGGTAGTTATTGACCGGCTCGTGAAAGGAGATTCGCGGCGTAACGTTGTTTCGATCATTGGTATGGGTGGATTGGGCAAGACAACCCTTGCCCGAAAGGTCTATAACAGCAACGAGGTGAAGCGATACTTCAATTGTCGCGCATGGTTCTATGTGTCAAATGAGTGCAGAGCCAGGCAGCTTTTGCTTGGCATTCTTCAACATTTGATGCCAAATGTTCAATATGAATGTAGAGGCAACAAGAAGGGTAAGAAACACAAAGAAACAGATAATAAGCCTCGAGATTTTTCTAGTATGAGTGAGGATGAGCTGAAGATAAGTGTGCGGGATTGTTTGAGGAGGAAAAGGTATCTGCTAGTCCTCGATGACTTGTGGAAAAAGCAAGATTGGGAAGAGGTACAAGATGCTTTTCCTGATGAAAACAGGGGTAGTAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCACACCAGTCATGATCCTCCCTACTACCTTCAATTTCTCAGTGAAGAACAAAGCTGGGAGCTCTTTTCCAGGAAAGTGTTTAGGGGAGAAGAGTACCCTTCAGACCTAGAGCCTCTAGGTAAACAAATAGTTCAAAGTTGTGGCGGTTTGCCACTCTCAATCGTGGTACTTGCGGGGTTGCTCGCAAACAAGGAAAAGTCTCACAGAGAATGGTCCAAGGTGGTGGGTCATGTCAACTGGTATCTTACAAGGGACGAGACTCAAGTCAAGGATATAGTACTCAAACTCAGCTATGATGACTTGCCTAGAAGATTAAAGCCATGTTTTCTATATCTTGGGATATTCCCTGAAGATTATGAAATCCATGTTAGGCAATTGCTCGAAAAATGGGTGGCTGAAGGATTTATACAAGAAACAGGGAGTAGAGATCAAGATGATGTTGCGGAAGATTACTTGTATGAGCTCATTGATCGAAGTTTGGTCCAGGTAGCAGAATTAAAGAAGACTAACGGAGGTGTGAAAACATGTCGCATCCATGATCTTCTTCGGGATCTCTGCATATCAGAGGGCAAAGAGGAGAAGGTTTTTGAAGTTTGCACTGATAATAACATTCTAATCCCGACAAAACCTCGCAGACTGTCCATCCATTGTAGCATGCCTCGCTACATTTCTTCAAGCAACAATGACCATTCATGTGTCCGTTCTTTGTTCTGCTTTGACACACGTTATTATGTTGATTGCAGCCAGTGGAACTGGCTTTTCGAAAGCTTCAAATTGGTTCGGGTGTTAGATATTATGGGGAAGGACCGCCGCATAAAGATCCCTTCCAACTTGGGGGACTTAATCCACTTAAGGTACTTTAGATTTGACCCAGGGTACAGTATACATATTCCAGCTTCAATATGCAACCTTCGAAATCTAGAAACCTTGGACCTGGGACGTTGTCCCGGGGTTTCCTTCCCCAATGAAATATGGAAGCTTAAGTATTTAAGGCATCTATACACATGTGGGGCTATCATGCTCCGTGGCCGTTGTTCAGAATCAGATGATGTTATGTGGAATCTTCAAACCATCTCTTGCATTGCACTCAATAAACAAGCATCGTCTCTCATAGAGAAAGGAAGGTTCCCCAAATTAAGAAAGTTGGGATTACAAATCTCCTCAAACTACAAGGGTAATTTGCCCAAATTGTTGTTAAACTTGCAACAATTAAGTCATTTGAATAAGTTAGACATCGCCTTCAAAAGGAAGAATCATGACAGCATGGAATGGAACTACAGTTGTAAGCCTCATGAACTGTTACAAAGCCTGAAGCACATGAGTCAGCTGAGTGTGCTAAAAATTGGGGGTGTCTTAGACCTTCCAACATTTGGGGCCTCGTTTCCTCCAAACATCGTTAAGTTAACATTGTCAGGTGGGTTCTCACAACTGGAGATGTTTCAGATCAGTTATTTGAAGGTCCAAAACTGGGAATTAGACAATGGTGCAATGCCACGCCTTCAAAGCCTCGTCGTCGACAATTGTTGGCAGTTGGATAGTCTCCCAAACGAACTGTGGTCTTTGACTGCCTTAAGAAAAGTGCGGGCTAGGGATCCCTCCGAAGCAATGGCTTCCATGCTACGTAATTTGGAAATGAAGAATGGGTGTGAACTCATAGTAGAAAAATCAGAGAGAGAATTTTTTTGGAGTCAAAATAGGTCTGTCGAAAGTTTTTATAGGGTGTGTTTGATGCACACATGA 2712 0.4362 MADSVVGFLLENLSQLLAHEAKLLCGVEDGIRSLHNELELINVYLKISEGKKSKNEIEQKVVSHIRDVAQVAEDVVDTFIANVAMHKRRSKLGRMLHSVDHAKLLHEVAEKIDKIKTTIVEIRDNKIKYDFPESSDQAREEEERVQFLHKRRRNVEEEDVVGFVHDSKVVIDRLVKGDSRRNVVSIIGMGGLGKTTLARKVYNSNEVKRYFNCRAWFYVSNECRARQLLLGILQHLMPNVQYECRGNKKGKKHKETDNKPRDFSSMSEDELKISVRDCLRRKRYLLVLDDLWKKQDWEEVQDAFPDENRGSRILITSRLKEVALHTSHDPPYYLQFLSEEQSWELFSRKVFRGEEYPSDLEPLGKQIVQSCGGLPLSIVVLAGLLANKEKSHREWSKVVGHVNWYLTRDETQVKDIVLKLSYDDLPRRLKPCFLYLGIFPEDYEIHVRQLLEKWVAEGFIQETGSRDQDDVAEDYLYELIDRSLVQVAELKKTNGGVKTCRIHDLLRDLCISEGKEEKVFEVCTDNNILIPTKPRRLSIHCSMPRYISSSNNDHSCVRSLFCFDTRYYVDCSQWNWLFESFKLVRVLDIMGKDRRIKIPSNLGDLIHLRYFRFDPGYSIHIPASICNLRNLETLDLGRCPGVSFPNEIWKLKYLRHLYTCGAIMLRGRCSESDDVMWNLQTISCIALNKQASSLIEKGRFPKLRKLGLQISSNYKGNLPKLLLNLQQLSHLNKLDIAFKRKNHDSMEWNYSCKPHELLQSLKHMSQLSVLKIGGVLDLPTFGASFPPNIVKLTLSGGFSQLEMFQISYLKVQNWELDNGAMPRLQSLVVDNCWQLDSLPNELWSLTALRKVRARDPSEAMASMLRNLEMKNGCELIVEKSEREFFWSQNRSVESFYRVCLMHT* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00346 903 Gene3D Ribonuclease Inhibitor 544 882 IPR032675 -
Rops3g00346 903 FunFam Probable disease resistance protein At1g63360 422 512 - -
Rops3g00346 903 PRINTS Disease resistance protein signature 183 198 - -
Rops3g00346 903 PRINTS Disease resistance protein signature 371 385 - -
Rops3g00346 903 PRINTS Disease resistance protein signature 626 642 - -
Rops3g00346 903 Pfam NB-ARC domain 169 423 IPR002182 GO:0043531
Rops3g00346 903 Gene3D - 422 513 IPR036388 -
Rops3g00346 903 FunFam Probable disease resistance protein At1g61300 142 331 - -
Rops3g00346 903 CDD RX-CC_like 2 124 IPR038005 -
Rops3g00346 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 436 IPR027417 -
Rops3g00346 903 SUPERFAMILY L domain-like 501 852 - -
Rops3g00346 903 Gene3D - 336 421 IPR042197 -
Rops3g00346 903 Gene3D - 5 118 - -
Rops3g00346 903 Pfam Rx N-terminal domain 5 91 IPR041118 -
Rops3g00346 903 FunFam Probable disease resistance protein At5g66910 336 422 - -
Rops3g00346 903 Coils Coil 138 158 - -
Rops3g00346 903 Gene3D - 140 329 IPR027417 -
Rops3g00346 903 PANTHER DISEASE RESISTANCE PROTEIN RP 52 834 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00346 Rops-Chr3 4308450 4315493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00346 184 509 WRKY Transcription Factor Family AT5G45050 25.680 3.38e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00346 - - mtr:25492796 1179.08