Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00343 ATGGCAGATAGCGTAGTTGGCTTTCTTTTAGAAAACTTGTCCCAGCTGCTAGCACACGAAGCTAAGTTGCTTTGTGGCGTGGAGGATGGAATCAGATCCCTCCACAACGAGCTCGAATTGATAAACGTCTACCTCAAAATCTCCGAGGGGAAGAAGAGCAAGAACGAGATAGAACAAAAAGTTGTGAGTCATATCAGAGATGTCGCCCAAGTAGCCGAGGATGTTGTCGACACATTCATCGCCAACGTTGCCATGCACAAGAGGAGGAGCAAGCTGGGGAGAATGCTCCATAGCGTTGACCATGCAAAGTTGCTCCACGATGTAGCTGAGAAAATAGACGAGATAAAAACCACTATCATTGAGATACGCGACAACAAGATCAAATATGACTTCCCAGAAAGCAGTGATCAAGCAAGAGAAGAGGAGGAGAGGGTGCAGTTGCTGCATAAGCGAAGAAGAAACGTGGAGGAGGAAGATGTAGTGGGCTTTGTCCATGACTCCAAGGTAGTTATTGACCGGCTCGTGAAAGGAGATTCGCGGCGTAACGTTGTTTCGATCATTGGTATGGGTGGATTGGGCAAAACAACCCTTGCCCGAAAGGTCTATAACAGCAACGAGGTGAAGCGATACTTCAATTGTCGCGCATGGTTCTATGTGTCAAATGAGTGCAGAGCCAGGCAGCTTTTGCTTGGCATTCTTCAACATTTGATGCCAAATGTTCAATATGAATGTAGAGGCAACAAGAAGGGTAAGAAACACAAAGAAACAGATAATAAGCCTCGAGATTTTTCTAGTATGAGTGAGGATGAGCTGAAGATAAGTGTGCGGGATTGTTTGAGGAGGAAAAGGTATCTGCTAGTCCTCGATGACTTGTGGAAAAAGCAAGATTGGGAAGAGGTACAAGATGCTTTTCCTGATGAAAACAGGGGTAGTAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCACACCAGTCATGATCCTCCCTACTACCTTCAATTTCTCAGTGAAGAACAAAGCTGGGAGCTCTTTTCCAGGAAAGTGTTTAGGGGAGAAGAGTACCCTTCAGATCTAGAGCCTCTAGGTAAACAAATGGTTCAAAGTTGTGGCGGTTTGCCACTCTCAATCATGGTACTGGCGGGGTTGCTAGCAAACAAGGAAAAGTCTCACAGAGAATGGTCCAAGGTGGTGGGTCATGTCAACTGGTATCTTACTAGGGACGAGACTCAAGTCAAGGATATAGTACTCAAACTCAGCTATGATGACTTGCCTAGAAGATTAAAGCCATGTTTTCTATATCTTGGGATATTCCCTGAAGATTATGAAATCCATGTTAGGCAATTGCTGGAACGATGGGTGGCTGAAGGATTTATACAAGAAACAGGGAGTAGAGATCCAGATGATGTTGCGGAAGATTACTTGTACGAGCTCAATGATCGGAGTTTGGTCCAGGTAGCCCGAGTGAAGAAGACTAACGGAGGTGTGAAAACATGTCGCATCCATGATCTTCTTCGGGATCTCTGCATATCTGAGGGCAAAGAGGAGAAGGTTTTTGAAGTTTGCACGGATAATAACATTCTAATCCCCACAAAACCTCGCAGACTGTCCATCCATTGTAGCATGCCTCGCTACATCTCTTCAAGCAACAATGACCATTCATGTGTCCGTTCTTTGTTCTGCTTTGACCCACGTTACTATGTTGATAGCAGTGAGTGGAAATGGCTTTCCAAAGGCTTCAAATTGGTTCGGGTGTTAGATCTTGTGGGGAAGTGCAGCAGAAAGATCCCTTCCAACTTGGGGGACTTAATCCACTTAAGGTACTTGAGATTAGACTCAGAGCACACTAGACATATTCCAGCTTCAATATGCAACCTTCGAAATCTACAGACCTTGGACCTAGGACCTTGGATCTTCAGGATCCCAATTTCTTTCCCCAGTGGAATATGGAAGCTCAAGCATTTAAGGCATCTATATACATATGGGCCTCTCATGCTACGTGGCCATTGTTCAGAATCACATGGTGATGTTATGTGGAATCTTCAAACCATCTCTTCCATTGTACTCAATAAACCAACATCGTCTCTCATAGAGAAAGGAAGGTTCCCCAAATTAAGAAACTTGGGGTTACAAATTCCCTCAAACTACAAGGGTAATTTGCCCAAATTGTTGTTAAACTTGCAACAATTAAGTCATTTGAATAAGTTAGTCATCTCCTTCGAAACGGAGAATCATAACTGCATGGAATGGAACTACAGTTGTAAGCCTCATGAACTGTTACAAAGCCTGGAGCACATGAGTCAGCTGAGTGTGCTAAAAATTGGGGGTGTCTTAGACCTTGCAACATGTGGGGCCTCGTTTCCTCCAAACATCGTTAAGTTAACATTGTCAGGTATTAGGGGCTTGAATGATGATGGGATGAATTCTTTGGGAAATCTCGCCAAACTCCGAAGTTTGATGCTATCTGGAGGTATTTTGTTTACAGATTCCTTTGACCTTAAGTGCATCGCAGGTGGGTTCCCACAACTGGAGATGTTTCAGATGGCATATTTGAATGTCAAAAACTGGGAATTAAACAATGGTGCAATGCCACGCCTTCAAAACCTTGTCATCGACCGTTGTCTGATATTGGATAGTCTCCCAAACGAACTGCAGTCTTTGACTGCCTTAAGAAGAGTTCTGCTTAGGGATCCCTCCGAAGCAATGACTTCCATGCTACGTAATTTGGAAATGAAGAATGGGTGTGAACTCATAGTAGAAAAATCATACCGAGAGTTTGTTTGGAGTCAAAATATGTTTGTCGAAGTTTTTTAA 2817 0.437 MADSVVGFLLENLSQLLAHEAKLLCGVEDGIRSLHNELELINVYLKISEGKKSKNEIEQKVVSHIRDVAQVAEDVVDTFIANVAMHKRRSKLGRMLHSVDHAKLLHDVAEKIDEIKTTIIEIRDNKIKYDFPESSDQAREEEERVQLLHKRRRNVEEEDVVGFVHDSKVVIDRLVKGDSRRNVVSIIGMGGLGKTTLARKVYNSNEVKRYFNCRAWFYVSNECRARQLLLGILQHLMPNVQYECRGNKKGKKHKETDNKPRDFSSMSEDELKISVRDCLRRKRYLLVLDDLWKKQDWEEVQDAFPDENRGSRILITSRLKEVALHTSHDPPYYLQFLSEEQSWELFSRKVFRGEEYPSDLEPLGKQMVQSCGGLPLSIMVLAGLLANKEKSHREWSKVVGHVNWYLTRDETQVKDIVLKLSYDDLPRRLKPCFLYLGIFPEDYEIHVRQLLERWVAEGFIQETGSRDPDDVAEDYLYELNDRSLVQVARVKKTNGGVKTCRIHDLLRDLCISEGKEEKVFEVCTDNNILIPTKPRRLSIHCSMPRYISSSNNDHSCVRSLFCFDPRYYVDSSEWKWLSKGFKLVRVLDLVGKCSRKIPSNLGDLIHLRYLRLDSEHTRHIPASICNLRNLQTLDLGPWIFRIPISFPSGIWKLKHLRHLYTYGPLMLRGHCSESHGDVMWNLQTISSIVLNKPTSSLIEKGRFPKLRNLGLQIPSNYKGNLPKLLLNLQQLSHLNKLVISFETENHNCMEWNYSCKPHELLQSLEHMSQLSVLKIGGVLDLATCGASFPPNIVKLTLSGIRGLNDDGMNSLGNLAKLRSLMLSGGILFTDSFDLKCIAGGFPQLEMFQMAYLNVKNWELNNGAMPRLQNLVIDRCLILDSLPNELQSLTALRRVLLRDPSEAMTSMLRNLEMKNGCELIVEKSYREFVWSQNMFVEVF* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00343 938 FunFam Probable disease resistance protein At1g61300 142 331 - -
Rops3g00343 938 FunFam Probable disease resistance protein At1g63360 422 512 - -
Rops3g00343 938 Pfam NB-ARC domain 169 423 IPR002182 GO:0043531
Rops3g00343 938 Gene3D Ribonuclease Inhibitor 524 923 IPR032675 -
Rops3g00343 938 CDD RX-CC_like 2 124 IPR038005 -
Rops3g00343 938 Gene3D - 336 421 IPR042197 -
Rops3g00343 938 Gene3D - 5 118 - -
Rops3g00343 938 PANTHER DISEASE RESISTANCE PROTEIN RP 54 847 IPR044974 GO:0006952
Rops3g00343 938 PRINTS Disease resistance protein signature 812 828 - -
Rops3g00343 938 PRINTS Disease resistance protein signature 371 385 - -
Rops3g00343 938 PRINTS Disease resistance protein signature 183 198 - -
Rops3g00343 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 436 IPR027417 -
Rops3g00343 938 SUPERFAMILY L domain-like 501 899 - -
Rops3g00343 938 Gene3D - 139 329 IPR027417 -
Rops3g00343 938 FunFam Probable disease resistance protein At5g66910 336 422 - -
Rops3g00343 938 Coils Coil 138 158 - -
Rops3g00343 938 Gene3D - 422 513 IPR036388 -
Rops3g00343 938 Pfam Rx N-terminal domain 5 91 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00343 Rops-Chr3 4273433 4276249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00343 184 799 WRKY Transcription Factor Family AT5G45050 24.148 6.40e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00343 - - mtr:25492796 1269.6