Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00336 ATGAGAGAAAGCATGAATGTAAGGCATTCCCACAAGCTTGTTACTTTGACCTTGGAGGGAAAAAAGGTGGAAAATATGAAGTTGAAGGGAGAGGAAATGAGAGAAGTTCAACTTGTGTTTATTATAGTGTCATGGTGGAGAAATTGGTCTGAAGTTGGACCAATGGACGGTACAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGGCTCAATGATCAGTTTGTAGAACTGGGTAGCATTTTAGACCCTGATAGGCCAAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTGAACGACCTTACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCCATGCTAAGTGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAATTTGAATAATCAGTATCAGCAGCAAATCAGGACTGTGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCAACATCATATCCATATCCTGTGCCAATGCCAGTACCTCCTGCTCCGATTCACATGCAGCCGTACCCATTCTTTGCTAATCAACATCCTGCAGTCATCCCTAACCCCTGTTCAACATATGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAGCAATCTACCCAGTATGTATCCCCACCACTCCATCCAGGTAGTCGGTCCCAAGTGTCAGGAAAACAAGACTCCAAAAACAAATCATCCAGGGAGAGCAAGGCTGAAAAAAATCAGGATTCTAATGATGTCACTACGGACCTGGAGTTGAAGACTCCTGGGTCTTCTGCTGATCAGGATTTATCATCCGGACAAAGAAAATCCAGTAAGTCGTCAAGGAAGGAAAGCAGTTTCACAGGACGTAGTTCGTTAGGTAGGTGTTCTTCATCTCATAGCGTTCAGGATAGCTCATCTAGTAGTGTAGTTGGGAGCAGAAAGTCTAATGAATGA 1011 0.4253 MRESMNVRHSHKLVTLTLEGKKVENMKLKGEEMREVQLVFIIVSWWRNWSEVGPMDGTAARKTQKADREKLRRDRLNDQFVELGSILDPDRPKNDKATILGDTIQLLNDLTSQVSKLKDEYAMLSEESRELSQEKNDLREEKASLKSDIENLNNQYQQQIRTVFPWTAMDHSVMMAPTSYPYPVPMPVPPAPIHMQPYPFFANQHPAVIPNPCSTYVPYLAPNTLVEQQSTQYVSPPLHPGSRSQVSGKQDSKNKSSRESKAEKNQDSNDVTTDLELKTPGSSADQDLSSGQRKSSKSSRKESSFTGRSSLGRCSSSHSVQDSSSSSVVGSRKSNE* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00336 336 CDD bHLH_AtILR3_like 65 139 - -
Rops3g00336 336 MobiDBLite consensus disorder prediction 230 251 - -
Rops3g00336 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 129 IPR036638 GO:0046983
Rops3g00336 336 PANTHER TRANSCRIPTION FACTOR BHLH121 51 334 IPR044579 GO:0003700|GO:0006879
Rops3g00336 336 MobiDBLite consensus disorder prediction 230 336 - -
Rops3g00336 336 MobiDBLite consensus disorder prediction 272 293 - -
Rops3g00336 336 MobiDBLite consensus disorder prediction 302 336 - -
Rops3g00336 336 MobiDBLite consensus disorder prediction 252 271 - -
Rops3g00336 336 Coils Coil 59 79 - -
Rops3g00336 336 Coils Coil 107 162 - -
Rops3g00336 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 110 IPR011598 GO:0046983
Rops3g00336 336 Gene3D - 58 139 IPR036638 GO:0046983
Rops3g00336 336 SMART finulus 66 116 IPR011598 GO:0046983
Rops3g00336 336 Pfam Helix-loop-helix DNA-binding domain 61 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00336 Rops-Chr3 4193554 4200529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00336 58 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.839 3.01e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g00336 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00336 - - cam:101491902 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00336 3 4193554 4200529 Rops3g00336 3 4193554 4200529 ECH