Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00329 ATGTTCACCTTGACAACTTCCATTATTGCATGCTTGGACTCACATGAAGTTGATCCTAAGCTTCTTGTTCCCTTTGCAGTCTTTATCATAGCCTTTTTGTTTCTTATTGTGACAGTTCCATTATCTGGGGGCCATATGAGTCCTGTTTTCACATTCATAGCTGCTCTAAAAGGTGTTGTGACTCTTTCTCGTGCTTTAATTTATGTGCTAGCACAATGCATTGGCTCAATAATGGGTTTCTTCATACTCAAGTGTGTGATGGAGCCAAAATTAATAGATACATATTCCTTGGGAGGTTGTGCCAATGGTGGCAAAGGAGTAAATTCTGGTATAAAGCAACAAGATGCTTTGTTATTGGAATTTGCATGCACATTTGTGGTGCTCTTTGTGGGTGTCACATTGGCATTTGATAAGAAAAGGTCCAAAGATTTAGGCTTGCCAATGGTATGCTTGGTGGTAGCGGGAGCCATGGCACTGGCAGTATTTGTGTCCATAACTGTTACTGGGCGGGCTGGTTATGCAGGTGTGGGCCTGAACCCAGCAAGATGCTTGGGCCCAGCATTGCTTCATGGAGGCCCATTATGGAATGGGCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGCTTAATCTATTATAGTGTCTCTATCAACTTACCAAAGGAGGGTTTGGTTTGGGTTGATGGAGAATATGATATCTTGAAGTTGGCAATGGGTTCTTGCGGGTCTGTTTCCAACAGAGACGTTTCAAACAATCTTCTAAAAGAAGGAAGTACGGGGTTCCAAGTCCATGCATGA 798 0.4336 MFTLTTSIIACLDSHEVDPKLLVPFAVFIIAFLFLIVTVPLSGGHMSPVFTFIAALKGVVTLSRALIYVLAQCIGSIMGFFILKCVMEPKLIDTYSLGGCANGGKGVNSGIKQQDALLLEFACTFVVLFVGVTLAFDKKRSKDLGLPMVCLVVAGAMALAVFVSITVTGRAGYAGVGLNPARCLGPALLHGGPLWNGHWVFWLGPFLACLIYYSVSINLPKEGLVWVDGEYDILKLAMGSCGSVSNRDVSNNLLKEGSTGFQVHA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00329 265 PRINTS Major intrinsic protein family signature 119 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00329 265 PRINTS Major intrinsic protein family signature 160 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00329 265 PRINTS Major intrinsic protein family signature 27 51 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00329 265 PRINTS Major intrinsic protein family signature 64 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00329 265 PRINTS Major intrinsic protein family signature 199 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00329 265 Pfam Major intrinsic protein 25 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00329 265 Gene3D Glycerol uptake facilitator protein. 1 219 IPR023271 -
Rops3g00329 265 PANTHER AQUAPORIN-LIKE 1 239 - -
Rops3g00329 265 SUPERFAMILY Aquaporin-like 20 211 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00329 Rops-Chr3 4143857 4144654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00329 41 222 Major Intrinsic Protein MIP AT1G17810 33.862 2.73e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00329 K09866 - gmx:100804160 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00329 3 4143857 4144654 Rops3g00329 3 4143857 4144654 ECH