Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00328 ATGGATCCAGCTGATTCACGAGTAGTTGATATTGATGCAAGATTTCCTAGGCATGTTCAAAGTCATGAGGGTGGCAAGAAGTCTCCCAAATTTCTTGCCTCCATTGGTGCCCATGAATTTTTCAGAATCGAGACGTGGAAAGCAGCTTTAACAGAGTTAACAGCAACAGCTTCTCTAATGTTCACCTTAACGAGTTCCATTGTTGCATGCTTGGACTCACATGAGGTCAATCCTAAGCTTATTATACCCTTTGCAGTCTTTATCATAGCCTTCTTGTTTCTTATTGTGACAGTTCCATTATCTGGGGGCCATATGAGTCCTGTTTTCACATTCATAGCTGCTCTAAAAGGTGTTGTGACTCTTTCTCGTGCTTTAATTTATGTGCTAGCACAATGCATTGGCTCAATAATTGGTTTCTTCATACTCAAGTGTGTGATGGAGCCAAAATTAATAGATACATATTCCTTGGGAGGTTGTGCCATTGGTGACAAAGGACAAAGTTCTAGTATAAAGCAACAAGATGCTTTGTTATTGGAATTTGCATGTACATTTGTGGTACTCTTTGTGGGTCTCACAAATGCATTTGACAAGAGAAGGTGCAAGGATTTGGGCTTGCCAATGGTTTGTTTGGTGGTAGCAGCATCCATGGCACTGGTAGTGTTTGTGTCCATAAGTGTGACTGGGCGGGCTGGTTATGCAGGTGTTGGGCTGAACCCAGCAAGATGCTTAGGCCCAGCATTGCTTCATGGAGGCTCACTATGGAATGGGCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGCTTAATCTATTATAGTATCTCTATAAACTTACCAAAGGAGGGTTTGGTTTGGGTAGATGGAGAATATGATATTCTAAGGTTGGCTGTAGGTTCATGCGGGACTGTCTCTAATAGTGCCGTTTGA 927 0.4272 MDPADSRVVDIDARFPRHVQSHEGGKKSPKFLASIGAHEFFRIETWKAALTELTATASLMFTLTSSIVACLDSHEVNPKLIIPFAVFIIAFLFLIVTVPLSGGHMSPVFTFIAALKGVVTLSRALIYVLAQCIGSIIGFFILKCVMEPKLIDTYSLGGCAIGDKGQSSSIKQQDALLLEFACTFVVLFVGLTNAFDKRRCKDLGLPMVCLVVAASMALVVFVSISVTGRAGYAGVGLNPARCLGPALLHGGSLWNGHWVFWLGPFLACLIYYSISINLPKEGLVWVDGEYDILRLAVGSCGTVSNSAV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00328 308 Gene3D Glycerol uptake facilitator protein. 34 279 IPR023271 -
Rops3g00328 308 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00328 308 PRINTS Major intrinsic protein family signature 47 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00328 308 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00328 308 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00328 308 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00328 308 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00328 308 PANTHER AQUAPORIN-LIKE 21 298 - -
Rops3g00328 308 SUPERFAMILY Aquaporin-like 43 270 IPR023271 -
Rops3g00328 308 Pfam Major intrinsic protein 42 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00328 Rops-Chr3 4137362 4144520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00328 12 270 Major Intrinsic Protein MIP AT2G37170 25.926 4.18e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00328 K09866 - gmx:100797262 467.618