Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00315 ATGGCTTTCCTTTTATGCTTCTTCATCTTCCTTCTTGCTTCATCTGCATCTGCTTGTGATCGCTGTGTCCACCAAACCAAAGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTGGACTTGAGTGGTGGACATCTTGCAGCTGGTGTGCCTTCCCTCTTCAAAAATGGAGCTGGTTGTGGTGCTTGCTTTCAGATAAAATGCAAGAACCCAACTCTTTGCACAAAAGCAGGTACCAGAGTCCTATTGACTGATCTTAATCACAACAATGAAACCGATTTTGTCCTCAGCAGCAGAGCTTTCATGGCCATGGCTCAGAAGGGTATGGGCCAACAAATTTTGAAGCTTGGCATTGTTGACATTGAATACAAGAGAGTACCTTGTGAGCACAAAAATAAAAATTTGGCTGTTCGAGTAGAAGAATCAAGCAAAAAACCAGATTATTTAGCAATTAAATTTTTGTACCAAGGGGGTCAAACAGAGATAGTAGCCGTTGATGTAGCTCAGGTTGGATCTTCAAACTGGGGTTTCATGACTAGGAATCATGGGGCTGTGTGGGACACAAGTAGGGTACCACAAGGTCCATTGCAATTCAGGATAGTGGTAACAGCAGGGTATGATGGTAAATGGATTTGGGCAAAGAAAGTTCTGCCTGCTGATTGGAGAACTGGGGAGATATATGACTCTGGTGTTCAGATAACAGACATTGCACAAGAGGGTTGTTCCCCTTGCGATGATGGGACATGGTCATGA 783 0.4419 MAFLLCFFIFLLASSASACDRCVHQTKASYFSKASALSSGACGYGSLALDLSGGHLAAGVPSLFKNGAGCGACFQIKCKNPTLCTKAGTRVLLTDLNHNNETDFVLSSRAFMAMAQKGMGQQILKLGIVDIEYKRVPCEHKNKNLAVRVEESSKKPDYLAIKFLYQGGQTEIVAVDVAQVGSSNWGFMTRNHGAVWDTSRVPQGPLQFRIVVTAGYDGKWIWAKKVLPADWRTGEIYDSGVQITDIAQEGCSPCDDGTWS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00315 260 FunFam Expansin-like A2 12 139 - -
Rops3g00315 260 SUPERFAMILY Barwin-like endoglucanases 8 141 IPR036908 -
Rops3g00315 260 Pfam Lytic transglycolase 57 133 IPR009009 -
Rops3g00315 260 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Rops3g00315 260 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Rops3g00315 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Rops3g00315 260 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Rops3g00315 260 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Rops3g00315 260 SMART dpbb_1 57 133 IPR007112 -
Rops3g00315 260 FunFam Expansin-like A2 140 244 - -
Rops3g00315 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Rops3g00315 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Rops3g00315 260 Gene3D - 140 244 IPR036749 -
Rops3g00315 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Rops3g00315 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Rops3g00315 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Rops3g00315 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Rops3g00315 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Rops3g00315 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Rops3g00315 260 Gene3D - 12 139 IPR036908 -
Rops3g00315 260 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Rops3g00315 260 PANTHER EXPANSIN-B3 11 242 - -
Rops3g00315 260 CDD DPBB_EXLA_N 14 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00315 Rops-Chr3 4006264 4008077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00315 16 260 Expansin Gene Family AT4G38400 66.802 4.71e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00315 - - gmx:100305884 462.996