Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00314 ATGGCATCCATGGAAGACATCAACATGACTGAGGATATTGCACTTCCAGGCTTCAGATTTCACCCCACAGAAGAAGAACTCCTTGAATTCTATCTTAAGAACATGGTTGTTGGCAAGAAACTTCTTTATGATGTCATTGGTTTCCTCAACATCTATCATCATGATCCTTGGGAGTTGCCTGGTCTGGCAAAGGTTGGTGAAAGAGAATGGTACTTCTTTGTGCCAAGGGACAAAAAGCATGGAACTGGGGGAAGGCCTAATCGCACCACTGAAAAAGGGTTCTGGAAAGCCACCGGTTCAGACCGGAAAATTGTGACCTTGTCTGATCCCAAGCGTATCATAGGGTTGAGGAAGACCCTTGTTTTCTATGAGGGAAGAGCTCCACGGGGATGCAAGACTGATTGGGTCATGAATGAGTACCGTTTACCTGATAATTGTCGATTACCTAAGGACATAGTGCTGTGCAAGATATATAGAAAGGCAACTTCTTTGAAAGTGCTGGAACAAAGGGCAGCATTAGAGGAAGAGATGAAACAAATGGTTGGTTCCCCTGCATCCCCTCCTTCCTCCACAGACACCATGTCCTTTAGTAGCCCACAGGAATACAAAAATGTGCCCCTGCCCTTGTTGCAACATGTTGTTCTTAAGAAAGAATCTGATGTTGAAACTGAAGAAATGATATCTATGCCTATGTCAGTGCCAAAACAAGAAAAAACAAAGACCCAATTACTAGTCAATGACAACAAAACCACTTGTGCTACATCACTGCAATTGCCCTTGGGGAAGGACAAGCTACCAGAGCTTCAGCTGCCCATGATCACAGATTGGACCCAAGATACCTTTTGGGCTCAGTTGAATAGTCCTTGGTTGCAAAACTTGACTCCTTCCAACATCCTTAACTTTTACTGA 909 0.44 MASMEDINMTEDIALPGFRFHPTEEELLEFYLKNMVVGKKLLYDVIGFLNIYHHDPWELPGLAKVGEREWYFFVPRDKKHGTGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGCKTDWVMNEYRLPDNCRLPKDIVLCKIYRKATSLKVLEQRAALEEEMKQMVGSPASPPSSTDTMSFSSPQEYKNVPLPLLQHVVLKKESDVETEEMISMPMSVPKQEKTKTQLLVNDNKTTCATSLQLPLGKDKLPELQLPMITDWTQDTFWAQLNSPWLQNLTPSNILNFY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00314 302 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Rops3g00314 302 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Rops3g00314 302 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Rops3g00314 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 224 - -
Rops3g00314 302 FunFam NAC domain-containing protein 67-like 23 164 - -
Rops3g00314 302 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00314 Rops-Chr3 3982829 3984852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00314 9 302 NAC Transcription Factor Family AT2G17040 59.259 8.88e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g00314 NAM 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00314 - - gmx:732555 518.079