Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00313 ATGCTTCAAAGCTTGGTCCCTCGTTCCCCTCTTAGTTCAAACCCTAACGCTATGAAAACGAAGCGCGCCGATCACGACGACAGTGATTCCACCGTCGTCCATGAGCCGTCCTTCAAGAGAAGAAACTTCTCCGGCGAGAAAACGGTGGAGGAAGGTGAAGGACACGAAGAGGAGCAAGTCATCGAACCTGAAACCGAAGGTGAATCAACCGGTCTCAAACTCTTAGGGCTTTTGCTTCAATGTGCTGAGTGTGTCGCCATGGATAATCTCGATTTCGCCAACGACCTATTGCCGGAGATCGCGGAGCTTTCCTCGCCGTTCGGAACATCGCCGGAGCGCGTCGGCGCGTACTTCGCACAAGCGCTTCAAGCGCGAGTGGTGAGTTCCTGCCTCGGTACCTACTCACCGTTAACCACTAAATCGGTAACCCTAACTCAGTCTCAGAAAATCTTCAACGCGTTCCAATCGTACAACTCGGTTTCTCCATTGGTGAAGTTCTCTCACTTCACCGCAAACCAAGCTATCTTCCAGGCCTTGGACGGTGAGGATCGTGTTCACATCATCGACCTTGACATCATGCAAGGCCTTCAATGGCCAGGATTGTTCCACATCCTTGCCTCGCGTTCTAGAAAGATCTGTTCCATGAGGATCACCGGGTTCGGATCCTCTTCGGAGCTTCTAGAATCAACTGGAAGAAGACTCGCTGACTTTGCGAGTTCACTCGGTCTTCCGTTCGAGTTTTACCCAGTGGAAGGCAAAATAGGGAGCGTGACGGAACTGAGTCAACTCGGTGTTAAACCGAACGAGGCAATCGTTGTGCACTGGATGCACCATTGCTTGTACGATATAACAGGCAGCGATTTAGGGACGTTAAGATTGCTGACTCAGCTGAGGCCCAAGTTAATCACGACCGTTGAACAGGATCTTAGCCACGCTGGGAGCTTCCTCGCGAGGTTCGTGGAGGCGTTGCATTATTACAGCGCGTTGTTTGACGCGCTTGGGGATGGATTAGGTGCGGACAGCCTCGAGAGGCATATGGTGGAGCAGCAACTGTTGGGCTGCGAGATTAGGAACATCGTCGCCGTGGGTGGACCCAAGAGGACTGGTGAAGTCAAGGTTGAAAGATGGGGTGATGAGTTAAAACGGGTCGGGTTTCGACCCGTTTCACTTCGGGGAAACCCGGCTGCACAGGCCAGTTTGTTGCTTGGGATGTTTCCTTGGAGAGGGTATACTCTCGTGGAGGAGAATGGTTCGTTGAAGATTGGTTGGAAGGATCTTTCCCTCTTGATCGCGAGTGCTTGGCAGCCGTCTGATTTGATTACTACTTACCCTGATTGA 1338 0.5202 MLQSLVPRSPLSSNPNAMKTKRADHDDSDSTVVHEPSFKRRNFSGEKTVEEGEGHEEEQVIEPETEGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGTYSPLTTKSVTLTQSQKIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKICSMRITGFGSSSELLESTGRRLADFASSLGLPFEFYPVEGKIGSVTELSQLGVKPNEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHMVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELKRVGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKIGWKDLSLLIASAWQPSDLITTYPD* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00313 445 MobiDBLite consensus disorder prediction 1 18 - -
Rops3g00313 445 MobiDBLite consensus disorder prediction 19 54 - -
Rops3g00313 445 ProSiteProfiles GRAS family profile. 65 435 IPR005202 -
Rops3g00313 445 Pfam GRAS domain family 76 435 IPR005202 -
Rops3g00313 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 430 IPR005202 -
Rops3g00313 445 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00313 Rops-Chr3 3967150 3969439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00313 18 438 GRAS Transcription Factor Family AT5G41920 65.258 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g00313 GRAS 1.5e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00313 - - gmx:100816249 767.303