Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00308 ATGTTGCAAGAAGGGTCTTCTTCTGTAACTTCTTCACCCTTGCAGTTCTTCTCCATGATGTCACTTTCACCTAGCTTAGGATCTCCCCACCCCTGGCTCAAAGAACTGAAATCTGAGGAAAGGGGTTTGTATTTGATCCATTTGTTGCTCACTTGTGCAAATCATGTAGCTGCTGGTAGTCTTGAAAATGCAAATACCGCACTTGAGCAAATTTCCCTGCTTGCTTCCCCTGATGGGGATACCATGCAAAGAATTGCAGCATATTTTACTGAAGCACTTGCTGATCGGATACTCAAAACATGGCCTGGGCTCCACAGAGCCCTCAACTCAACTAGAATGATTATGGTTTCTGAAGAAATTCTTGTTCACAAGCTCTTCTTTGAGCTTTTCCCTTTCTCGAAGGTAGCATTTTTTCTGACAAATCAGGCTATCATTGAAGCAATGGAAGGGGAGAAAATGATTCATATAATTGATCTCAATGCTGCTGAACCTGCTCAGTGGATTGCTCTCCTCCAAATTCTTAGTGCACGCCCTGAAGGCCCTCCTCATTTGAGAATCACGGGGGTTCATCAGAAGAAAGAGATTCTGGACCAGATAGCTCATAGACTGACTGAAGAAGCTGAAAAGTTGGATATACCATTCCAGTTCAACCATGTAGTCAGCAAATTAGAAAATCTTGATTTTGACAAACTTCGTGTAAAAACTGGGGAGGCACTAGCAATAAGTTCTATCCTCCAATTGCATTCCCTTTTGGCATGGGATGATGAAGCCATGCAGAGAAAATCTCCTCTTCTATCTAAAAGCTCAAATGGAATTCACCTGCAAAGAGTCTTGCCAATGAGCCAAAGTGCAATGGGTGATTTACTTGAGAAAGATATGGTAAATGGGTATACCCCAAGTCCTGACTCAACCTCATCATCACCAGCATCTTTAACTACTTCAAATTTAATGAATATGGAGAGCTTTCTTAATGCCTTATGGGGATTATCACCAAAGGTCATGGTTGTCACAGAACAAGACTCCAATCATAATGGTTCCACTCTGATGGAAAGGCTACTGGAAGCTCTATATTCTTATGCAGCATTATTTGATTGTTTGGAATCCACTGTCTCAAGATCCTCATCGGAAAGATTAAGGGTGGAGAAGATGCTTTTTGGTGAGGAAATCAAGAACATTATTGCATGTGAGGGATCTGAACGTAAGGAAAGACATGAAAAGCTGGATAAGTGGTTCCAGAGATTTGATTTAGCTGGGTTTGGTAACGTGCCTTTAAGCTATTTTGGTATGTTGCATGCAAGGAGGTTGCTGCAGAGCTATGGTTGTGAGGGATATAAAATGAGGGAGGAAAATGGTTGTGTAGTAATTTGCTGGCAGGATCGGTCCTTGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1419 0.4172 MLQEGSSSVTSSPLQFFSMMSLSPSLGSPHPWLKELKSEERGLYLIHLLLTCANHVAAGSLENANTALEQISLLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRMIMVSEEILVHKLFFELFPFSKVAFFLTNQAIIEAMEGEKMIHIIDLNAAEPAQWIALLQILSARPEGPPHLRITGVHQKKEILDQIAHRLTEEAEKLDIPFQFNHVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAWDDEAMQRKSPLLSKSSNGIHLQRVLPMSQSAMGDLLEKDMVNGYTPSPDSTSSSPASLTTSNLMNMESFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRSSSERLRVEKMLFGEEIKNIIACEGSERKERHEKLDKWFQRFDLAGFGNVPLSYFGMLHARRLLQSYGCEGYKMREENGCVVICWQDRSLFSISAWRSRK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00308 472 ProSiteProfiles GRAS family profile. 36 469 IPR005202 -
Rops3g00308 472 Pfam GRAS domain family 45 469 IPR005202 -
Rops3g00308 472 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 464 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00308 Rops-Chr3 3785089 3787556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00308 1 472 GRAS Transcription Factor Family AT1G50420 68.530 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g00308 GRAS 9e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00308 - - gmx:100814131 804.283