Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00305 ATGAAGTTCTCAAAGGATCTAGAAGCTCAACTCATACCAGAATGGAAAGAGGCCTTCGTCAACTATTGGAAACTCAAGAAACAGATAAAGAGGATCAAGCTCTCTAGAGTTCCCAAGCAACCACACCATGCAAAGGAAGACTGTGGTCTCTCCTGTTTCGATTCTTTTCGCTTCCTTGTCAAGAAAATCACCCACAAGCTCTCAAGTTCCGACCATGACAACCTCAACATCATTCAGGAGAGGAAGAAAACTATCAAGGGCAGTGGAGAAGAAATCTATAAAACAGAGCTCGCACAGTTATTTTCAGAAGAGGATGAGGTGCGTGTGTTTTTTGTGAGGCTTGGTGAAGAGTTAAACAAGGTGAACCAATTTTACATGAAACAAGAGAGCGAGTTCCTTGAGACAGGAGAAACCTTGAACAAACAGCTTCAGATTTTGCTTGATCTATTATCAGTTACTGATAATACGCTTGAGAAGATCTATAGAGATTATAGTGTTGTTGTTGCTGTGGAGATGGAGTTTGTGGGGAAAAGCGTGAAAAAAGAGGTGAAAGGGGTTGGGATAATCTCGGGAACTGTGAAATCTTACGACCCTGCCTCGGGTTTTGTGGAGATCCTTTATGAAGATGGTGATTCCGAGGAATTGGAATCCTCTGACGTGGTTTCCCTCTTGGAATTTCAACCGGAGCTTGCAAAACCCAAGCCTCGGGTCGGTCGGAAACCCAAGAAGCGCCGTCGGGTCGAGAAGAAGCACGAAACGACGACGTTTTCAGGTAATGTTAGTGAAAATTTGAGTAGTGAATTTAGGGGGTTTTTGGATGGTAATAATGATTCTGCTAGTGAGAATTTGGTGATGTGTGACGGTGAATTAGGTTTGGATGTGGGAAATGGGAATGGAGGGAATCTTTTGGGCAATTTGAATGCAAGTGTGAATGCAAACGGGAATGAAGAAACTATGAGAAAGGAAATTGGATTTGAAGAGAATTTGAATGAGAGTGTATCTGCTAATGGGGATTGTGTTAAAGATGGACTTGATTTGAATGCTAGGATTAATCTGAATGAGGATATTAATCTGAACGATGTGTGTAGTTCGCCTTTTAACACTGAGGATAGTTTGAAGAGAAGAGATTGCATTGACTTGAATTTGGATGCGAATAACGAGGATGATGTTAACCTGAATGCGGGTGGCTTGGGTTGTTCGGGAGGGGAAACATTGCAGCGGGAATGTAGTTTTGATTTGAATGTGGAGGTATGTGAAGAAGTAAAGGAAGCTCAGGGTGATGCCGATAGAAATGGACATTCTGAGATAGATGATTTGGTTGGTAAGATGGGGCAGCTCCAAGAGGAGGAGACAAATATTAATCACGAGTCTATGGAAGATGATGGTGTTCGTGGTGATTTGAATCATGTCTCTGATGCTGTCAAATTGGAGGAAATTCAGATTTCTGTTGAGCATGCACCTAAAGATGCTTCTTTGTGTTTGATTGAGGAAAAGGAACATGGTGACGGCAAAGAAGATGCAGCAGCTATTGATTCTCTTCAGGTTTCAAATGTGATTTCTGTTAGGGATTGTGATTCTGTTTCTGCGGTGGTTCAGCAAACAGGTCCTTCTGAAGCTGGTTTTGCTATAGTTCATGAATATCACAATGATCTGCGAAGTCCCTGCAAAATAGGAAGTAGCCGGAGGAAAAGAAGAAAAGTATCAGATGATCTGATAACCACCCCAGAGACGATTTTAAGGAGGAGTTCTCGCCGGGCATCAGCTAGAAAACAGGTTTCAAGCACCATATCAGAGCAGGTGACTGATGATCCTTTGTTGTATTCGGGAACCAGTGCCTTAACAGAAGAAAAACCTTTAATGCCTGGTTCTGAGAAATATGAGCAATGCAATGTTCCCCTCCCAAAGCTGCAATTACCCCCTTCTTCTCAAAATTTGAATTTAGATGATGTTCCCGTTCTTGAACTTTTTTCTGTTCATGCTTGTTTAAGATCGTTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATTTTGTAGCTGCACTGAAGTCTGAAATCCCTAGCATATTATTTGACAACATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATCTGGAATACCTTTCCAACGAGGGCTGCCAGTCTGCATCCAATTGCCTGAGGAATGTTAACTGGGATTTCTTGGACCTGGTCACATGGCCCATTTTCATGGCTGAGTACCTTCTGATTCATGGTTCAGGGTTTAAAACTGGTTTTGATTTTAACCATTCAATGTTTAGAACAGACTACTACAAAAAACCTGTAACTTTGAAGCTTGAGATTCTTCAGTACCTGTGTGATGATATAATTGAAGCAGAAGTCATAAGGTCAGAGCTTAACAGAAGATCTTTGATAACTGAGACCGGTATGGGTTTTGATCAGAATATTTATTTTGACACTGGCAAGAAAAGAAGAGCTGTAATGGACGTGTCTGGTGGCTCTTGCTTGACTGAGGAGATTGTGGATGACACAACTGACTGGAACAGTGATGAATGCTGCCTTTGTAAGATGGATGGGAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGATGTGTGGGGATTGCAAGTGATAATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTGGCGCACACAGGGCTTGGATGAAATCACGCAGGTTACTCCGAGGAGCAGACTTGTTAGGGATTGATCTTCATGGCCGTCTTTATTTTAACAGCTGTGACTACCTGTTAGTGTCAAACTCATCTGATGAGGGGTCCTTGTTCAATTACTACCACAGAAATGATCTACATGTTGTAATTGAAGTTCTAAAGTCTATGGATTCTTTATATGGAGGCATAGTAATGGCTATCTACAAGCATTGGGATATCCCTGCCGACTTAAGTGCGGGGGCTACTAGCTTGTTAGTCTCTAATCTAAGTTCCTGCAAGAACATGCAGATGGCAGGTGAATATTCTGCTATGCATACATCTTTAGCACCTTTTACTTCTTCCGGAACATGTATGGACAAGAATCAGGCTGATGATCAAAGAAAATTGGATGAAAATTCAACTCTTGACTGTTCTACTTGTCATGGCCAAGAGTTTCCAAAAGCTGGAAACCTTTTAGACTCAATGACAACCATAGAAAGTCCTTGTATTGCTTCAGAAGGATCAGCTGATACCACACAAATGAGATCAGGTGCCGATAATGTTCAATTGCATGGGATTTATGATTCCAATAAATCTGATGAATCCTTGAATCAGGCTGGAATACCAGAAAAATACCATCCCACTGGTGACTGTTCTTTGACATCTTCCAGCTTAGATGTGGGACGTAAAATAAACTTACGATCTGTAGATGCTAGTAGTACTCCCTACACTGACAATAAGGACACATCAAAAGCACCTTGTGGGATTGACTACATCAACTATTACAGCTTTGCCCGTGTGGCCTCATTAGTTGCACAGGAGTTGATCTGTAAGTCACCTGAAAAGATCAATAAGAATTTTGCAATGTCTGAAGAAGAAATAATTTCAGACCAAACAAAGGCCATCATGAAGAAATCTTCCAACTTTTGTTGGCCAAGTATTGAAAACCTAAATGCAGCTGCCCTAAAGGAAAAATGTGGGTGGTGCTTTTCTTGCAAAGTTGCAAATGATGACAGAGATTGCTTGTTTAATTCTGTGGTGAAGCCTGTTTGTGAAGTGTCTAAAAGTACTTTAGTTGGGCTTCAACCCAGGAAGATCCAGCAGGGACATCTTCGAGAGATCATATGTTATATTTTCTCCCTTGAGATTCGATTACGTGGGCTTTTGTTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATAAGGAGCTTTTGAAGACACCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGGCATCTTGCACTCTCTGCAGATTGGTTCAAGCATGTGGATTCTGTTGTTACTATGGGATCAGCTGCTCATATTGTGGTCAGTTCATCACGCACATCTTCAAGGCATGGTATTGGAAGGAAAAGAGCTAGGTATTCAGATATTGAATCCAGTTCATCTTCAAATGCTACTGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGCAGGGTTTCCCGAAAATTGTATAATTGGAAGGTTTTGCCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCAGACATTTTATATCCTGAGAATTCGGATTTTGCAAGGAGAAGCAGATATGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACTAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTATGTATGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAAGCAATTGTACGCAGAAAGTGCACTGATGGGCAATCTGTGAAATACCTTCTTGATTTTGGGAAGAGAAGGGCCATTCCAGATATTGTTATGAAACATGGTTCTTTGTTGGAACAACCCTCTAGTGAGAGGAAAAAATATTGGCTGGAAGAGTCTTATGTTCCCTTGCACCTTCTAAAGAATTTTGAGGAAAAAAGAATTGTCCGCAAGTCTGATGATAAGAAACTCGGAAAAATTCTTGAGATTGGTAGAGTAAAGAGGGTTCCTCAACAAAGGGGATTTTCATATTTGTTTTCTAGAATGGAAAGATCTGATTGTCAGCAGTGTGGGCATTGCAAGAAAGATGTTCCAATCAGGGAAGCTGTGAGTTGCCTTTATTGCAAAGGATATTTCCACAAGAGGCACATCAGGAAATCTGGTGGCACAAGACCCTCTGAATGCACATATTCATGTCACAAATGCCAGGCTGGGTTGCATGTAAAGACTAATACTAATAGAAGGAAAGTTGACTCAAAACTGCAGAAGATTAAATCACAGAAATGTAGAAATGTCCCTTTAGTTTGTAAATCCGTGAACCTTAAAGGCAATAAAAAGGCATCAAGTAAGGTGCGGCAGGTGAGATCTCGAACCAATAAGAAGATCCCATCAGGTGTACCACTTCGTCGTTCTACTAGGAAGGCCAAATCCTTGTATCTGCAAAGTCAAATGATTGGAGGACGTAAAAAAGGAGTGCAAAGTAAAAAGAATGTAGGACGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAGGTGACCTCTCAGAAGTCCAAGGAAACTACTGGTCAACGGAAGAAGTTGGCAGTAAGTATTGTCCGGAAGAAAAGATCGAAAATCTGTAACAGTTACTGGCTTAATGGTCTCTGTTTGTCTAGAAAGCCAAATGATGAACGAGTAACGCTGTTTAAAGAGAAAAAGCTTGTTGCCTCCACCAAAAATTTTTCTGGCTCCTGTGATCGTCCTAAATGCCGCCTTTGTTGTGGAGATGGATGCACTTTAAATTATATTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGGGATGCTTTTGGGCTCACTGTAGAAAATGCTGGACAACTTATTGGATTTAGGTGCCATGTTTGTCGCGATAGGGGTGCTCCCATCTGCCCCCATATGAAGAGTAATGCATTGTCTCACACTGAAAGCAATGCTGCAATTGAGTGTGCAGAGGAATTATCTAATCCTGTTTCTCTTCAACCTTTGAGTGAGATCCCTTGTAATTAA 5733 0.4125 MKFSKDLEAQLIPEWKEAFVNYWKLKKQIKRIKLSRVPKQPHHAKEDCGLSCFDSFRFLVKKITHKLSSSDHDNLNIIQERKKTIKGSGEEIYKTELAQLFSEEDEVRVFFVRLGEELNKVNQFYMKQESEFLETGETLNKQLQILLDLLSVTDNTLEKIYRDYSVVVAVEMEFVGKSVKKEVKGVGIISGTVKSYDPASGFVEILYEDGDSEELESSDVVSLLEFQPELAKPKPRVGRKPKKRRRVEKKHETTTFSGNVSENLSSEFRGFLDGNNDSASENLVMCDGELGLDVGNGNGGNLLGNLNASVNANGNEETMRKEIGFEENLNESVSANGDCVKDGLDLNARINLNEDINLNDVCSSPFNTEDSLKRRDCIDLNLDANNEDDVNLNAGGLGCSGGETLQRECSFDLNVEVCEEVKEAQGDADRNGHSEIDDLVGKMGQLQEEETNINHESMEDDGVRGDLNHVSDAVKLEEIQISVEHAPKDASLCLIEEKEHGDGKEDAAAIDSLQVSNVISVRDCDSVSAVVQQTGPSEAGFAIVHEYHNDLRSPCKIGSSRRKRRKVSDDLITTPETILRRSSRRASARKQVSSTISEQVTDDPLLYSGTSALTEEKPLMPGSEKYEQCNVPLPKLQLPPSSQNLNLDDVPVLELFSVHACLRSFSTLLFLSPFELEDFVAALKSEIPSILFDNIHVSILQTLRKHLEYLSNEGCQSASNCLRNVNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDFNHSMFRTDYYKKPVTLKLEILQYLCDDIIEAEVIRSELNRRSLITETGMGFDQNIYFDTGKKRRAVMDVSGGSCLTEEIVDDTTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECAIGAHRAWMKSRRLLRGADLLGIDLHGRLYFNSCDYLLVSNSSDEGSLFNYYHRNDLHVVIEVLKSMDSLYGGIVMAIYKHWDIPADLSAGATSLLVSNLSSCKNMQMAGEYSAMHTSLAPFTSSGTCMDKNQADDQRKLDENSTLDCSTCHGQEFPKAGNLLDSMTTIESPCIASEGSADTTQMRSGADNVQLHGIYDSNKSDESLNQAGIPEKYHPTGDCSLTSSSLDVGRKINLRSVDASSTPYTDNKDTSKAPCGIDYINYYSFARVASLVAQELICKSPEKINKNFAMSEEEIISDQTKAIMKKSSNFCWPSIENLNAAALKEKCGWCFSCKVANDDRDCLFNSVVKPVCEVSKSTLVGLQPRKIQQGHLREIICYIFSLEIRLRGLLLGPWLNLHQTNLWHKELLKTPDFLPVKRLLLLLESNLRHLALSADWFKHVDSVVTMGSAAHIVVSSSRTSSRHGIGRKRARYSDIESSSSSNATGGLGMYWWRGGRVSRKLYNWKVLPRSLVTKAARQAGCTKIPDILYPENSDFARRSRYVAWRAAVEMSTSVEQLALQVRELYSNIRWHDIENNHPLCMLDKESRKSVRLFKKAIVRRKCTDGQSVKYLLDFGKRRAIPDIVMKHGSLLEQPSSERKKYWLEESYVPLHLLKNFEEKRIVRKSDDKKLGKILEIGRVKRVPQQRGFSYLFSRMERSDCQQCGHCKKDVPIREAVSCLYCKGYFHKRHIRKSGGTRPSECTYSCHKCQAGLHVKTNTNRRKVDSKLQKIKSQKCRNVPLVCKSVNLKGNKKASSKVRQVRSRTNKKIPSGVPLRRSTRKAKSLYLQSQMIGGRKKGVQSKKNVGRKKGKQSKSKKVTSQKSKETTGQRKKLAVSIVRKKRSKICNSYWLNGLCLSRKPNDERVTLFKEKKLVASTKNFSGSCDRPKCRLCCGDGCTLNYIACEICGDWFHGDAFGLTVENAGQLIGFRCHVCRDRGAPICPHMKSNALSHTESNAAIECAEELSNPVSLQPLSEIPCN* 1911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00305 1910 Pfam SPX domain 1 36 IPR004331 -
Rops3g00305 1910 Pfam SPX domain 69 148 IPR004331 -
Rops3g00305 1910 ProSiteProfiles Zinc finger PHD-type profile. 844 891 IPR019787 -
Rops3g00305 1910 Pfam PHD-finger 847 889 IPR019787 -
Rops3g00305 1910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1811 1871 IPR013083 -
Rops3g00305 1910 PANTHER PHD FINGER FAMILY PROTEIN 170 1870 - -
Rops3g00305 1910 Pfam DDT domain 653 705 IPR018501 -
Rops3g00305 1910 MobiDBLite consensus disorder prediction 1680 1762 - -
Rops3g00305 1910 MobiDBLite consensus disorder prediction 1730 1747 - -
Rops3g00305 1910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 834 904 IPR013083 -
Rops3g00305 1910 SMART PHD_3 846 889 IPR001965 -
Rops3g00305 1910 SMART PHD_3 1818 1865 IPR001965 -
Rops3g00305 1910 SUPERFAMILY FYVE/PHD zinc finger 1796 1866 IPR011011 -
Rops3g00305 1910 ProSitePatterns Zinc finger PHD-type signature. 847 888 IPR019786 -
Rops3g00305 1910 ProSiteProfiles SPX domain profile. 1 265 IPR004331 -
Rops3g00305 1910 CDD SPX_PHO1_like 2 149 IPR034092 -
Rops3g00305 1910 CDD PHD1_AIRE 846 888 - -
Rops3g00305 1910 SUPERFAMILY FYVE/PHD zinc finger 830 889 IPR011011 -
Rops3g00305 1910 MobiDBLite consensus disorder prediction 232 254 - -
Rops3g00305 1910 ProSiteProfiles DDT domain profile. 649 709 IPR018501 -
Rops3g00305 1910 SMART testlast3 649 709 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00305 Rops-Chr3 3723339 3754092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00305 172 1879 PHD Transcription Factor Family AT5G12400 41.008 0.0 1130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Rops3g00305 SPX 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00305 - - gmx:100800973 2549.24