Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00276 ATGATCAACATGGAGATAGAAGCTGCAGCAAGCAGTAGCAACAAAGGCGGCAACTGGGGTGCAACTGAGAGTGATGTAGCATACGGTGGCTTTGATAGGGGAAGCTTCTTGGCTTGGGAAGATCTTAGGGTGGTGCTACCAAACTTTGGGAAGGGACCAACCAAGAGGTTGCTTAATGGTCTTAATGGTTATGCTGAGCCTGGTAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAGTCCACTTTGCTGGATGCACTAGCAGGTAGACTCTCAAAAAATGTGGTCATGACAGGAAATGTTCTTCTCAATGGGAAGAAAAAAAGCCTGGGCTGTGGTTTTGTTGCTTACGTGACTCAAGAGGATGTGCTGCTGGGAACTCTTACTGTGAAGGAAACCATATCTTATTCAGCACATCTACGTCTTCCAACTACAATGACCAAAGAAGAAGTGAATAGCATTGTGGAAGGAACAATCATAGAAATGGGTCTCCAAGACTGTGCTGATAGGTTGATAGGTAACTGGCACTTGAGAGGTATAAGTGGAGGTGAGAAGAAAAGACTTAGCATTGCACTTGAGATCCTTACAAGGCCTCGTTTACTGTTTCTTGATGAACCCACCAGTGGCCTAGATAGTGCCTCAGCTTTTTTTGTTGTTCAAACTCTTAGAAGTGTTGCTCGTGATGGAAGGACTGTTATCTCTTCCATTCACCAGCCAAGCAGTGAAGTTTTTGCACTCTTTGATGACCTTTTCTTACTATCTGGTGGTGAAACTGTTTATTTTGGAGAAGCAAAAATGGCAGTAGAGTTTTTTGCTGAGGCTGGTTTTCCTTGTCCACGTAAAAGAAATCCTTCTGATCACTTTCTACGATGTATCAATTCTGACTTTGACATTGTAACAGCTACATTGAAGGGATCTCAAAGAATTCATGATGTTCCAAATTCATCAGATCCTTTCATGAACTTGGCTACAGCAGAGATTAAGGCAATGCTAGTTGAGAAATATAGGCGTTCAACCCATGCCAGAAGGGCAAAAGACAGGATCAGAGAGCTATCTACCAATGAAGGGCTTGAAACTGAGACACAAAATGGAAGTCAAGCTAGTTGGTGGAAGCAACTCTTGACATTGACAAGGAGATCATTTATCAACATGTGCAGAGATGTGGGTTACTACTGGTTGAGGATTATAATTTACATCATTGTATCTATATGTGTTGGAACTATTTATTTTGACATTGGCTATAGCTATACTTCGATCCTGGCCCGTGGAGCATGTGGTGCATTTATATCAGGATTTATGACATTCATGTCAATTGGAGGCTTTCCATCATTTATTGAAGAAATGAAGGTTTTTTATCGAGAAAGGCTTAATGGATATTATGGAGTAGCCGCATATATTTTAGCCAACTTCCTTTCTTCTTTCCCATTCTTGGTTGCTATTGCTCTCACTGCAAGCACCATCACTTATAACATGGTGAAATTCCGGGCTGGAATAATTGGAATCATGATGATGACCTCAGGATTCTTCAGGTTGCTATCTGATCTTCCAAAGCCGGTTTGGCGCTACCCAATTTCATATATTAGTTATGGAGCATGGGCAATACAGGGTGCCTACAAGAATGACTTGCTTGGGCTTGAGTTTGATCCTCTGATACCCGGTGACCCAAAATTGAAGGGAGAATACGTCATCACTCACATGTTGGGCTTGGAATTAGACCATTCCAAGTGGTGGGACTTAGCAGCACTTTTCGTCATTCTCATATGTTACAGAGTTCTTTTCTTTATTATTCTGAAGTTCAAGGAGAGAGCATCCCCATTATTTCAGACACTTTATGCCAAGCGAACCATACAACAGCTAGAAAAAAGACCTTCTTTTAGGAAGATACCTTCTTTTCCTTCACAGAGGCATCAACCACAACATCCACTGTCTTCTCAAGAGGGTCTTGATTCTCCACTCCACTAG 1965 0.4204 MINMEIEAAASSSNKGGNWGATESDVAYGGFDRGSFLAWEDLRVVLPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDALAGRLSKNVVMTGNVLLNGKKKSLGCGFVAYVTQEDVLLGTLTVKETISYSAHLRLPTTMTKEEVNSIVEGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRSVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKMAVEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIHDVPNSSDPFMNLATAEIKAMLVEKYRRSTHARRAKDRIRELSTNEGLETETQNGSQASWWKQLLTLTRRSFINMCRDVGYYWLRIIIYIIVSICVGTIYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLVAIALTASTITYNMVKFRAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQGAYKNDLLGLEFDPLIPGDPKLKGEYVITHMLGLELDHSKWWDLAALFVILICYRVLFFIILKFKERASPLFQTLYAKRTIQQLEKRPSFRKIPSFPSQRHQPQHPLSSQEGLDSPLH* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00276 654 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524|GO:0016887
Rops3g00276 654 Gene3D - 38 275 IPR027417 -
Rops3g00276 654 MobiDBLite consensus disorder prediction 631 654 - -
Rops3g00276 654 FunFam ABC transporter G family member 11 31 275 - -
Rops3g00276 654 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 281 IPR003439 GO:0005524
Rops3g00276 654 Pfam ABC-2 type transporter 373 497 IPR013525 GO:0016020|GO:0140359
Rops3g00276 654 Pfam ABC transporter 58 209 IPR003439 GO:0005524
Rops3g00276 654 CDD ABCG_EPDR 34 263 - -
Rops3g00276 654 Pfam ABC-2 type transporter 238 294 IPR043926 GO:0140359
Rops3g00276 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 270 IPR027417 -
Rops3g00276 654 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 32 498 - -
Rops3g00276 654 SMART AAA_5 67 238 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00276 Rops-Chr3 3414144 3421704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00276 53 250 Calmodulin-binding Proteins AT2G36910 30.144 8.00e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00276 K05681 - gmx:100807692 1175.61