Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00247 ATGATGAGGCTGCAGACATATGCGGGTCTTAGTTTGATTGCTACTCTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTTTATCTGGCAACTTCTAAGATTAGTTTGGTGCTTCTTCTCAACATGGGTCTAGTCATCATGTGTGTTCTGTGGCAGTTAACCAAAAAGGTGTTCCTTGGTTCCCTTAGAGAGGCTGAGGTTGAGAGGCTTAATGAGCAGTCATGGAGGGAGGTTATGGAAATCCTCTTTGCCATAACTATCTTTAGGCAGGACTTTTCTATTTCATTCCTTGTCATGGTTACAGCACTATTGTTAATCAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTTGAGTACATAGAGACCACTCCTTCCGTGCCTATGTTGTCTCATGTTCGAATTGTATCTTTTATGGGTTTCCTTCTTGTTCTAGATGGCCTCTTTTTTTATAGTTCTGTGAAGCATTTGATAGTATCACGGCAGGCTTCGGTTTCACTCTTCTTTTCTTTTGAGTACATGATACTAGCGACAACAACAGTGTCAATTTTTGTAAAATATATCTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACGTTTTACCTTGAACTTGTCAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTTTTGTAATTTTCATAAACTATGGTGTTCCTTTGCACTTGATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAATTCGTGTGGCAGATTACATACGTTATCGCAAGATTACTTCTAACATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACTGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCACTGGTTGTACCGGCAGAAAATGGGACCACAACTGCTGCTGGGGGGCAGCAAGGATCACGGTCAGATGCTCATCAACATGGGACTGGCACTGGAAGCACAGCTCAAGTTGAGGTTGGCAGTGGGGCGGCAACTGATAATTTAAGTCAGCATCAAGCAAGACTTCAAGCTGCTGCTGCAGCAGCTGCAATATATGAGAAGTCTTATGTTTACCCCTCTGCAACTTCTTTTGTCTGGTCGCCTGGTTACACTCTTTATCCCCCGGCTCAAAGGTCTGTGGCTGAATCATCTAGCACCGAGCTTAAAGGAGAACAAGCATCCAGTGAGGAAGCACAGAAGCAGTTTATGATCCCTGGTGGACCAATGAATATATCCTTTCCTCCAATGCAAAACTTCTATTTTCTACCTTCCCAAACACATGCAGCCGTCGCGAATTATGGAGAGAGGTTTGGAAACGATCCGAATATGCCGAACTCTCAGCTGGAAGCTCAAAGAAAACTCCAAAATGAGATTGAGCAAAATCAGCTCGAGCTTCTGCAGAATACAAATGTTGACAAAGGTGTAGATGAGGACACATCATTATCAGATAGCAGAGGCAAGCACGTTGCTTCCCCTTCATCTGTATCTAGTCATGAGGAGATTCAACATAATAAAGCATAA 1650 0.4315 MMRLQTYAGLSLIATLAITYHAFNSRGQFYPAMVYLATSKISLVLLLNMGLVIMCVLWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSISFLVMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLVLDGLFFYSSVKHLIVSRQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYLCFFFVIFINYGVPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTTTAAGGQQGSRSDAHQHGTGTGSTAQVEVGSGAATDNLSQHQARLQAAAAAAAIYEKSYVYPSATSFVWSPGYTLYPPAQRSVAESSSTELKGEQASSEEAQKQFMIPGGPMNISFPPMQNFYFLPSQTHAAVANYGERFGNDPNMPNSQLEAQRKLQNEIEQNQLELLQNTNVDKGVDEDTSLSDSRGKHVASPSSVSSHEEIQHNKA* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00247 549 SUPERFAMILY RING/U-box 272 336 - -
Rops3g00247 549 MobiDBLite consensus disorder prediction 340 367 - -
Rops3g00247 549 MobiDBLite consensus disorder prediction 528 542 - -
Rops3g00247 549 PANTHER RING ZINC FINGER PROTEIN 1 510 - -
Rops3g00247 549 MobiDBLite consensus disorder prediction 509 549 - -
Rops3g00247 549 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Rops3g00247 549 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Rops3g00247 549 SMART ring_2 292 329 IPR001841 -
Rops3g00247 549 CDD RING-H2_synoviolin 289 330 - -
Rops3g00247 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 339 IPR013083 -
Rops3g00247 549 Pfam Ring finger domain 291 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00247 Rops-Chr3 3058114 3063846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00247 1 533 C3H Transcription Factor Family AT3G16090 65.065 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00247 K10601 - gmx:100816441 865.914