Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00239 ATGGGAACGCGACAGCGGCAATCATGTGGAGAGGAAGAGGATGAGGAGGTGCTAGGTTGTGGAACCACGATTTCGGGGCAATCAGCGTCGACGAGTAGAAGTGCTGGGTTGCCGTCTAGCCGGAGCGAGCAGACGACGGCAACAGCCGCCGGTGATAATACTTTTCTCAAATTGAACCATCTTGACATACATGCTGATGATGCTGGATCACAGGGAGCAGTTGCCAAAAAGAAAAAGAGAGCCCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGTCAATTTAGTATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTTGTCCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTCTGAACGTTCTGATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAAGAAAGCAGCCTATCTGCAGGAGCTTGAGGAGCAATACGTAGGTCTTCAAAACCTTATCCAACGAAATGAACAATTATATAGCTCAGGAAATCCTCCCAGCGGAGGTGTATCATTACCTTTTATTCTAGTACAGACACGTCCTCATGCAACCGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATAATATGACACACAATCTCACCGATGGAGGTGAAGGTTCTAGCATGTCAGGATTGTATCAGTCACAGGTTCCTCCTTCAGTTTCAAACATGTCAGCCAGACCTCCCACGTCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGCATTGA 1026 0.4454 MGTRQRQSCGEEEDEEVLGCGTTISGQSASTSRSAGLPSSRSEQTTATAAGDNTFLKLNHLDIHADDAGSQGAVAKKKKRAQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSVLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTHNLTDGGEGSSMSGLYQSQVPPSVSNMSARPPTSPPLPGILKARVKQEH* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00239 341 SUPERFAMILY "Winged helix" DNA-binding domain 92 173 IPR036390 -
Rops3g00239 341 FunFam Transcription factor-like protein DPB 178 302 - -
Rops3g00239 341 Pfam Transcription factor DP 180 294 IPR014889 -
Rops3g00239 341 MobiDBLite consensus disorder prediction 1 46 - -
Rops3g00239 341 FunFam Transcription factor-like protein DPB 84 177 - -
Rops3g00239 341 SUPERFAMILY E2F-DP heterodimerization region 178 293 IPR037241 -
Rops3g00239 341 MobiDBLite consensus disorder prediction 288 341 - -
Rops3g00239 341 CDD DP_DD 177 280 IPR014889 -
Rops3g00239 341 MobiDBLite consensus disorder prediction 288 319 - -
Rops3g00239 341 Pfam E2F/DP family winged-helix DNA-binding domain 92 172 IPR003316 GO:0005667|GO:0006355
Rops3g00239 341 PIRSF Txn_factor_DP 3 341 IPR015648 GO:0005667|GO:0051726
Rops3g00239 341 PANTHER TRANSCRIPTION FACTOR DP 22 295 IPR015648 GO:0005667|GO:0051726
Rops3g00239 341 SMART E2F_TDP_2 89 172 IPR003316 GO:0005667|GO:0006355
Rops3g00239 341 MobiDBLite consensus disorder prediction 21 46 - -
Rops3g00239 341 Gene3D Transcription factor DP 178 310 IPR038168 -
Rops3g00239 341 SMART DP_2 179 339 IPR014889 -
Rops3g00239 341 Gene3D - 84 177 IPR036388 -
Rops3g00239 341 Coils Coil 188 222 - -
Rops3g00239 341 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00239 Rops-Chr3 2998753 3002480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00239 90 290 E2F-DP Transcription Factor Family AT5G02470 55.446 5.20e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops3g00239 DP 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00239 K04683 - qsu:112000390 575.089