Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00236 ATGGAAAAAACCATTATGTCAGAAGAAGCTGTGGACATGTACACCCAACAGAAAACACAAAGTGTGTCGACTCCCAAAACTACCCATATCTTTAGATCAAAATTACCAGACATACCCATCCCCAACAACCTCCCCCTCCACACCTACTGTTTCCAAAAGTTACCCGAAATCGCCCATCGGCCATGTCTCATCGCCGCCGGCAGAACCTATACCTACGCTGACACTTACCTCTTGTGTAGAAAGGTGGCCACGGGTCTGTCCAACCTCGGCATCAACAAAGGCGACGTGATCATGATCCTCCTCCCCAACTCTCCGGAGTTCGTTTTCTCCTTCATGGCTGCTTCCATGATCGGCGCCGTCGCCACCACCGCCAACCCATTCTACACCGCCGCCGAAATCTCGAAGCAACTCGCCGCTTCCAACGCCAAACTCATCGTCACCCGGTCCTCCTACGTTGAAAAGCTCCCCAAAATAGGGGAGCATTTGAAGGCGGTGATCACTGTCGATGAGCCACCGGAGAACTGCCTCCATTTCTCGGCGGTTTTGGAGAGTGAAGCGTGGGAGGAGGAGGAAGATATCGAGGGGGATTCGGCGGTGGCGCTGCCTTTTTCATCGGGGACGACGGGGTTAGCGAAGGGCGTAGTTTTAACACACAAGAGCCTGGTTACGAGCGTCGCTCAAATGGCGGATGGAGAGAACCCTAACTTGTACCTGAAGGAAGAGGACGTGGTGCTGTGCGTGTTGCCACTGTTTCACATATTCTCGTTGCACAGCGTGATGATGTGCGCGCTGAGAGCGGGAAGTGCCATTTTGCTGGTTGAGAAGTTTCAGATACCTGCATTGCTGGAGCTGATAGAGCGGCACAGGGTGACCGTGGCGATGGTGGTGCCGCCACTGGTGCTGGCTCTTGCCAAGAACCCCACCGTAGGGAATTATGACCTCGGCTCTATACGGTTGGTCATGTCAGGGGCAGCGCCGCTCCCGAAGGAGCTTGAGGATGTTCTTAGGACCACCTTGCCCCATGCAGCTTTCGGACAGGGGTACGGGATGACGGAGGCTGGGCCAGTGTTGTCCATGTGTTTGGGGTTTGCAAAGCAGCCATTTCCCACGAAGTCAGGCTCATGTGGCACTGTGGTCAGAAATGCAGAATTGAAGGTCGTTGACCCTCAAACTGGTTCTTCTCTTCCTCGTAACCAGCCCGGTGAGATTTGCATCCGAGGCCCACAGATCATGAAAGGATACCTAAACGATGAGAAGGCCACTGCAGCAACGATTGATGTAGATGGTTGGCTTCACACGGGTGATATTGGCTACGTAGATGATGATGATGAGGTTTTCATCATTGACAGGGTCAAGGAACTCATCAAATTTAAAGGCTTCCAGGTGCCACCGGCAGAACTTGAAGGACTTCTTATGAGCCATCCTTCCATTGCAGATGCAGCTGTTGTCCCGCAAAAGGATGATGCTGCCGGTGAAGTTCCAGTTGCTTTCGTGGTAAGCTTTGATCTCACTGAGGAGGCCGTAAAGGAGTTTATAGCTAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTTGATGCAATTCCAAAGTCTACATCTGGAAAGATATTAAGAAAAGAGCTCAGAGCAAGGATCACCCAGACGGCCTAG 1659 0.519 MEKTIMSEEAVDMYTQQKTQSVSTPKTTHIFRSKLPDIPIPNNLPLHTYCFQKLPEIAHRPCLIAAGRTYTYADTYLLCRKVATGLSNLGINKGDVIMILLPNSPEFVFSFMAASMIGAVATTANPFYTAAEISKQLAASNAKLIVTRSSYVEKLPKIGEHLKAVITVDEPPENCLHFSAVLESEAWEEEEDIEGDSAVALPFSSGTTGLAKGVVLTHKSLVTSVAQMADGENPNLYLKEEDVVLCVLPLFHIFSLHSVMMCALRAGSAILLVEKFQIPALLELIERHRVTVAMVVPPLVLALAKNPTVGNYDLGSIRLVMSGAAPLPKELEDVLRTTLPHAAFGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPQTGSSLPRNQPGEICIRGPQIMKGYLNDEKATAATIDVDGWLHTGDIGYVDDDDEVFIIDRVKELIKFKGFQVPPAELEGLLMSHPSIADAAVVPQKDDAAGEVPVAFVVSFDLTEEAVKEFIAKQVVFYKRLHKVYFVDAIPKSTSGKILRKELRARITQTA* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00236 552 Pfam AMP-binding enzyme 59 457 IPR000873 -
Rops3g00236 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 32 452 - -
Rops3g00236 552 Pfam AMP-binding enzyme C-terminal domain 466 538 IPR025110 -
Rops3g00236 552 SUPERFAMILY Acetyl-CoA synthetase-like 30 549 - -
Rops3g00236 552 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Rops3g00236 552 Gene3D - 21 451 IPR042099 -
Rops3g00236 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 546 - -
Rops3g00236 552 CDD 4CL 40 544 - -
Rops3g00236 552 Gene3D - 452 551 IPR045851 -
Rops3g00236 552 FunFam 4-coumarate--CoA ligase 2 453 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00236 Rops-Chr3 2974181 2978679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00236 24 464 Monolignol Biosynthesis Gene Families AT1G65060 69.799 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00236 K01904 - gmx:100790396 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00236 3 2974181 2978679 Rops3g00236 3 2974181 2978679 ECH