Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00231 ATGGGTGTTGATGGATGTCAAAATCGTAGGTTTGGGCAAGATTCGAAGGCATGCAGTGGTGGTGGTACTCAGAGCTCGGATTCCACGAACCATGGTTGGGAAAATCAGAAGAATGGTTTGTTTTGTGATTGTGGACTGAGGGTTGTGTTGCTTACGGCCAACACAACAAAAAAACCCAAGGAGACCTTTCTACAGATGTCCATTGGCGAAGGTAATGATGTACAGTTGAATACTTATGGTTTTAGAAAGGTTGACCCAGACCGATGGGAATTTGCAAATGAAGGGTTTTTAAGGGGTCAAAAGCAATTGTTGAAGAGTATCAGTAGAAGGAAATCTGCTCATGTAAATGGTAATAGTCAACAACCGACTCAGGTGCAGAACTCGAATGTTGGGGCATGTGTTGAAGTTGGGAAGTTTGGGATTGATGAAGAGATTGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAACAACAACAAACGACTGATAACCAATTGCAAGGTGTTGGGCAACGTGTACAGGTAATGGAGCAGCGTCAGCAACAGATGATGTCATTCCTGGCTAAGGCCATGCATAGTCCGGGCTTCTTGGCTCAGTTTGTACAGCAGCAGAATGAAAGTAATAGGAACATCACTGCAGGTAAAAAGAGGAGGCTACACAGCCAGGAAGAAGATAGTTTAGCTACCAAGGATGTCCATCATGCTCTTGATGGACGTGTTGTCAAGTACCAGCCTTCGATAAATGAGGCTGCAAAAGCATTAATTTCCCAGATACTGCAAATGAACAATTCTACAAGGATGGAGTCATCAATGAAGAACCCTGATGCATTCCTCATTGATGATGTTCCTTCAGCCATTGCATTAGATAGCAGTAGTTCATCCACCCGGGTTTCTGGTGTAACCCTGTCTGAGGTTCCACCTATTTCTGGGCAATCACATATGGCATTAGAATCTCAATTTCATGCTGGTTGTATACCCAATAGCATGTCTGAGGTACAGTCTTCACCTACTGTGTTGACTGACTGTGTCAAAGCAACTGAATTTCCACAACCTACTACACATAATTGCCAAGACAATGTTTTGGATTTTGGTAAAGATCAAGGGATGGGGCCAGAAAGCAGCTTCATGAATCCTGATCTAACTTTTATGGGGTCTGACACTGGGAATGAGGAGCAGATGGACATGATGTCAACTGTTTTAGATGGGATTCAGTCTGCAGAAGCTGATGCTTTTTCTCCTGATGCAGATGCGATTTCTAAGCTTCCAGGGATCAATGATGAATTCTGGGAACAGTTTTTTAGGCCAAGCCCACTTACTGGAGATACAGATGAAGTTAAATGTTTCTCTCCAGGATTTGGGACTTCTTGCTTCGGAGTCTTAATTGTGTATAGATGTTTCTTGCAACTGAAGAGGTTGAGGTCCTTTGCTGCTGGGCAGATAAAGCCATCCGACTTCTCCAAAGATCCCTGA 1491 0.4326 MGVDGCQNRRFGQDSKACSGGGTQSSDSTNHGWENQKNGLFCDCGLRVVLLTANTTKKPKETFLQMSIGEGNDVQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKSAHVNGNSQQPTQVQNSNVGACVEVGKFGIDEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQGVGQRVQVMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESNRNITAGKKRRLHSQEEDSLATKDVHHALDGRVVKYQPSINEAAKALISQILQMNNSTRMESSMKNPDAFLIDDVPSAIALDSSSSSTRVSGVTLSEVPPISGQSHMALESQFHAGCIPNSMSEVQSSPTVLTDCVKATEFPQPTTHNCQDNVLDFGKDQGMGPESSFMNPDLTFMGSDTGNEEQMDMMSTVLDGIQSAEADAFSPDADAISKLPGINDEFWEQFFRPSPLTGDTDEVKCFSPGFGTSCFGVLIVYRCFLQLKRLRSFAAGQIKPSDFSKDP* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00231 496 Coils Coil 145 165 - -
Rops3g00231 496 MobiDBLite consensus disorder prediction 13 32 - -
Rops3g00231 496 Gene3D - 73 111 IPR036388 -
Rops3g00231 496 SMART hsfneu3 37 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops3g00231 496 Pfam HSF-type DNA-binding 75 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops3g00231 496 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 75 303 IPR027725 -
Rops3g00231 496 SUPERFAMILY "Winged helix" DNA-binding domain 75 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00231 Rops-Chr3 2930927 2941677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00231 75 452 HSF AT5G16820 52.020 1.26e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops3g00231 HSF_DNA-bind 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00231 K09419 - gmx:100793665 449.514