Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00230 ATGGAGTTCTTAAGTTGTATTATGCTCCTCCTTGTGTTGACACTTACTCTTGCACATTTGCTGCTTTCAAGAGGCAGCAAGAAAGCAAAGAACAAGCTCCCACCAGGACCTTCACCTATTCCCATTATAGGAAACCTCCTTGCACTGGGCAAAAAGCCTCACCAGTCCTTGGCAAATCTTGCTGAGACTCACGGCCCAATCATGAGTCTAAAGCTAGGCCAAGTAACCACCATAGTTGTCTCTTCACCTGACATGGCAAAAGAGGTGCTCCAAACCCATGATCAGTTCTTGTCAGACCGAGCTGTTCCCCAAGCTGTGCAAGTTCATGACCACCACAAGCATAGCATGACCTTCTTGCCTGTTTCACCTCAATGGCGAGACCTAAGGAAAACATGCAATGCTCAGTTATTCTCCAACAAGACTCTTGATGTTAGCAAAGACCTTAGGCGTAAGAAACTGCAACAACTCCTCAGTGATATCCATCAAAGCAGCCTAAACGGTGAAGCAGTAGATATTGGAAGAGCAGCTTTCAAGACTGCCATAAATTTATTATCACACACTGTTTTCTCTCTAGATTTGGTTCATTCTGCAGGTTCAGCTGGAGATTTCAAGGACTTGGTGATAAATATCATGAAAGAAGGTGGAAAACCAAACCTGGCTGACTACTTTCCAGCACTGAAGATGGTTGACCCACAGGGAATCAAAAATCGCAACGCTAGTTATGCTGGGAAGGTCATAGACATCTTCCGCGGTTTGATTGATCAACGGTTGCAGCTCAGGGAACTTCAAGGCTTTGACACAAACAATGACATGCTAACTAGTTTGCTCAACATTGATCAAGTGAACAGCCAAGAGACAAACAATACCGAAATTGAACATTTATCTCTGACTCTCTTTGTTGCGGGAACGGATACAATTACATCTACGCTAGAATGGGCAATGGCAGAGTTACTTAAAAATGAAAAGGTTCTGTCAAAAGCAAAACAAGAGTTGGAGCAAATCATTGGCAAAGGTAAACCCATTGAGGAATCAGACATTGCTAGGTTACCTTATCTAGAAGCAGTAATAAAAGAGACATTTCGAATGCACCCTCCAGTCCCATTTTTAATCCCCCGGAAAGCCAATGCAAATGTGGAAATTTGTGGATACACAATCCCAAAAGATGCACAGGTGCTAGTCAATGTGTGGGCTATTGGTAGAAATTCAAGTATTTGGGAAAATGCAAATTTGTTTTCACCAGAGAGGTTCTTAAGCTGTGAAATCGATGTCAAAGGTCACAATTATGAGCTTACACCATTTGGTGCAGGGCGTCGAATTTGTCCTGGTTTGGCGTTAGCCATGAGGATGTTGTATTTGATGCTGGGTTCACTGATTAACTGCTTTAACTGGAAACTTGAAGATGGAATGAAGATGGATGATACGAACATGGAGGAGCACTTTGGGATAACTTTAGCAAAGGCTCAACCCGTGAGAGCTATTCCAGAGAAAATAAGCAATTAA 1500 0.4273 MEFLSCIMLLLVLTLTLAHLLLSRGSKKAKNKLPPGPSPIPIIGNLLALGKKPHQSLANLAETHGPIMSLKLGQVTTIVVSSPDMAKEVLQTHDQFLSDRAVPQAVQVHDHHKHSMTFLPVSPQWRDLRKTCNAQLFSNKTLDVSKDLRRKKLQQLLSDIHQSSLNGEAVDIGRAAFKTAINLLSHTVFSLDLVHSAGSAGDFKDLVINIMKEGGKPNLADYFPALKMVDPQGIKNRNASYAGKVIDIFRGLIDQRLQLRELQGFDTNNDMLTSLLNIDQVNSQETNNTEIEHLSLTLFVAGTDTITSTLEWAMAELLKNEKVLSKAKQELEQIIGKGKPIEESDIARLPYLEAVIKETFRMHPPVPFLIPRKANANVEICGYTIPKDAQVLVNVWAIGRNSSIWENANLFSPERFLSCEIDVKGHNYELTPFGAGRRICPGLALAMRMLYLMLGSLINCFNWKLEDGMKMDDTNMEEHFGITLAKAQPVRAIPEKISN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00230 499 CDD CYP76-like 61 494 - -
Rops3g00230 499 Coils Coil 314 334 - -
Rops3g00230 499 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 9 495 - -
Rops3g00230 499 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 SUPERFAMILY Cytochrome P450 34 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 Gene3D Cytochrome P450 20 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Rops3g00230 499 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops3g00230 499 FunFam Cytochrome P450 76C4 25 493 - -
Rops3g00230 499 Pfam Cytochrome P450 34 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00230 Rops-Chr3 2921113 2922929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00230 1 496 Cytochrome P450 AT2G45550 45.652 2.94e-166 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00230 - - lja:Lj0g3v0208479.2 678.322