Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00225 ATGCCCTTCAGGCTATATATAAGAAGCACCTCTCTGCTAAATATCCAAGTTCCAATAGAGTACCATAAGTCTTGTTTATATACCTTTATTCTCCACTTCACAACACTCCAAGTGCCTGTGATGATGGGGAGAACACCATGCTGTGATGAAAGTGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTGAGAAACATGGGCATGGGAGTTGGAGAGCACTTCCAAAGCTTGCAGGACTGAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAACTATTTGAGACCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATTTGCCAGGGAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATCTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTAGATCACCTTAATATTCTATCCAATCTTCAACAGTTGCTGGATGCTACAAACGTTTTAAGTAGTTTCACAAACACTTGGGACATTAATGCCCTAAAGCTGCAGTCAGATGCCACACAACTAGCCAAACTCCAATTGCTGCTTCAAGCCTTTGGTGCCAATCCTAACACAAACTTGGATCTACTCAATCCATATGGAACATCATCCTCACTTCCAGACAGTTTTCTGTATGAACTTTTAGGATTAAATCAGTCTAAGCTTCAAAACCTTTACAATGGTTCAACTGGTTTTCCTTCTCAAAATCAGCCCAATTTCCAAAGCTTTGAAGCTTCTCATCTTCAGCCAGCTCTATCCACTGGCTATCACCACATGAATGGAAGCAGCATTAGTAGTTGCATGAAGTCTCAAAAGGTTGATGAACAACTTGATACCATAAATTCTTCTTCAACACCATTAAATTCACTTCCAAATCTGGTTTCAGCCTCACCTGAATGTTCCACTGTCAAGCAAATGGAAAACAAGATAAACCCAAATGAGTGCTCCCACCCTTCTTCCTCTTCAACAACTTTTGAAATGTTGGGAGATTTCATGTATGAGGAAGCAAGCGATGCTTATTGGAAAGATCTCATAGACCAAGAGTCTAACCAGTAA 1161 0.4074 MPFRLYIRSTSLLNIQVPIEYHKSCLYTFILHFTTLQVPVMMGRTPCCDESGLKKGPWTPEEDRILVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRLDHLNILSNLQQLLDATNVLSSFTNTWDINALKLQSDATQLAKLQLLLQAFGANPNTNLDLLNPYGTSSSLPDSFLYELLGLNQSKLQNLYNGSTGFPSQNQPNFQSFEASHLQPALSTGYHHMNGSSISSCMKSQKVDEQLDTINSSSTPLNSLPNLVSASPECSTVKQMENKINPNECSHPSSSSTTFEMLGDFMYEEASDAYWKDLIDQESNQ* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00225 386 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Rops3g00225 386 CDD SANT 110 153 IPR001005 -
Rops3g00225 386 Pfam Myb-like DNA-binding domain 55 102 IPR001005 -
Rops3g00225 386 Pfam Myb-like DNA-binding domain 108 153 IPR001005 -
Rops3g00225 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 157 IPR017930 -
Rops3g00225 386 FunFam Transcription factor MYB39 110 171 - -
Rops3g00225 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 334 - -
Rops3g00225 386 FunFam MYB-related transcription factor 54 107 - -
Rops3g00225 386 SUPERFAMILY Homeodomain-like 52 149 IPR009057 -
Rops3g00225 386 Gene3D - 110 157 - -
Rops3g00225 386 ProSiteProfiles Myb-like domain profile. 103 153 IPR001005 -
Rops3g00225 386 Gene3D - 52 108 - -
Rops3g00225 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 102 IPR017930 -
Rops3g00225 386 SMART sant 54 104 IPR001005 -
Rops3g00225 386 SMART sant 107 155 IPR001005 -
Rops3g00225 386 CDD SANT 57 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00225 Rops-Chr3 2868884 2870713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00225 42 381 MYB Transcription Factor Family AT5G16770 50.975 8.84e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g00225 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00225 K09422 - gmx:547488 543.888