Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00218 ATGAGAGAAATTTGCAGAAACTTCCAGCGAGGCAGCTGTCAATATGGAGACAGGTGTAGGTATCTACATGTACAACAACAACAGCGAAAATCTAATGTTCACGGGTTCGGAGGACAGAGCAATTCTCACCAACAGCAAAATACAAATCCTTTTGGGTTCGGGTCTCACGTAGGCTCTGGCTCGCACCAACAGCATAAGAACAATCCTTTTGGTTTTGGCATGCAGAACAGCTCCCAGTTAAATGGGGGTCCTGCTAACCAATTTAAGCCTTTTGAAAACAAATGGAATCGACTTTCATCAAAACCCCAGAATAGCGCTTCACGTCAACCTGATAATCATTCCCAACCAGTGAATCATAAATGCACAGATCCTGAGATTTGCAAGCGCCAGATTGCAGAAGATTTTGAGCAAGAGAAACCACTTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCAGCGGCTTATGAGGATGCCAAGAATGGAATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAATTTACTAAAATCCAAGATGGTTGAGTTTGAGAAACTACTTTCTGAACCCTACAAAGTGCCACTGAATTCTTCTCTTGACATTCAAAAGTACCAATCCAATGGAGCCACCACAAATCCATTTTCACCAACTCCTCAAAATAATAGTCCTTTGTCTGTATCAAGCTTTAGCCAACTGGGTGCTTCCTTGAACATGGGTTTTGAAAGGCCCTCTGCTCCACAAATGAACACACTGGCGCAGCCTAGTTACTTTGGAAGTGGAGGAAACTCTTTGACATCCAACACAGCAAACCTATTTGGCAGTGGTATCTCAGCTGCTCAAAACAGCCCCTATTCAACACCAGTGGAGTTGACAATGTTTCCAGGTTCAACTTCTCAGCAATCATCCATTGCCTTCAATGACTCTGGCTCCACTACAATGTTTAAGACAACATCAGATGTTCCATCATTAAATAAGTCCCAAGTGGAGAATGTGTCCGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCTGAAGAAGCTCCTCCAGATGCATTTGTTCGGTAG 1125 0.4284 MREICRNFQRGSCQYGDRCRYLHVQQQQRKSNVHGFGGQSNSHQQQNTNPFGFGSHVGSGSHQQHKNNPFGFGMQNSSQLNGGPANQFKPFENKWNRLSSKPQNSASRQPDNHSQPVNHKCTDPEICKRQIAEDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRAAAYEDAKNGMSLQSIVEKERNLLKSKMVEFEKLLSEPYKVPLNSSLDIQKYQSNGATTNPFSPTPQNNSPLSVSSFSQLGASLNMGFERPSAPQMNTLAQPSYFGSGGNSLTSNTANLFGSGISAAQNSPYSTPVELTMFPGSTSQQSSIAFNDSGSTTMFKTTSDVPSLNKSQVENVSGDVSIWLKEKWNPGEIPEEAPPDAFVR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00218 374 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Rops3g00218 374 MobiDBLite consensus disorder prediction 30 121 - -
Rops3g00218 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 25 IPR000571 GO:0046872
Rops3g00218 374 ProSiteProfiles Zinc finger C3H1-type profile. 1 26 IPR000571 GO:0046872
Rops3g00218 374 SUPERFAMILY CCCH zinc finger 3 28 IPR036855 GO:0046872
Rops3g00218 374 MobiDBLite consensus disorder prediction 221 242 - -
Rops3g00218 374 Gene3D - 1 78 - -
Rops3g00218 374 MobiDBLite consensus disorder prediction 30 119 - -
Rops3g00218 374 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 220 373 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops3g00218 zf-CCCH 9.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00218 K14321 - gmx:100814339 551.592