Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00204 ATGCCGAGCACTCCGCAGGTTATTACATGCAAAGCTGCGATATGCTGGGGGTTAGGAAAGCCTGTGATAATGGAAGAGATACAAGTTGACCCACCAAAAGCAACCGAAGTTCGTGTTAAGATGCTTTGTTCCAGTGTCTGCCATACAGACATCCTAAGCACTCAAGGGTTCCCTCACACTAATTTTCCTCTGGCACTTGGACACGAAGGAGTTGGTGTTGTAGAGAGTGTTGGTGATCAAGTGACGAATCTGAAAGAAGGGGATATGATAATTCCAACATACATAGGCGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATCTTTGCATGACATACCCTATAAGATTGACTGGCCTGATGCCTGATAACACTTCAAGGATGTCCATCCGAGGGCAGAGGCTATACCATGTTTTCAGTTGTGCTACATGGTCAGAGTACATGGTTATTGATGCCAACTACCCTCTCAAAGTTGATCTAAGCATGGATCCAGCCCATGCCAGTTTCATCTCATGTGGGTTTTCAACTGGTCTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGAACAAGTGTAGCTGTTTTCGGTCTTGGGGCTGTTGGATTAGGGGCTATAAGCGGAGCCAAGATGCAGGGAGCAACTAAGATAATTGGGATTGACAAAAACGAGCTGAAGAGAGAAAAAGGAGTAGCTTTTGGAATGACCCACTTTATAAATCCTGGTGATTCTGTTAAATCTGCTTCAGAATTGGTCAAGGAACTAAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTCCCTCTTTGCTTACTGAATCCTTGGAAGCCACAAAAGTGGGAACAGGTAAAACAATTGCAATTGGAATAGGAGCTGAACCTATTGTACCGCTTGGTCTTCTTGCCATTCTGTTTGGTAGAACTTTGAAAGGTTGTGCTTTTGGAGGGCTAAAAACCATAACGGACCTTTCCATCATAGCTAATAAATGCCATAAGAAGGAATTCCCTCTTCAAGAACTATTCACCCATGAGGTCCCATTTGCAGACATAAACAAAGCATTTGAGCTATTGAAACAACCCAACTGTGTGAAAGTTGTCATCAAGATGTGA 1125 0.4364 MPSTPQVITCKAAICWGLGKPVIMEEIQVDPPKATEVRVKMLCSSVCHTDILSTQGFPHTNFPLALGHEGVGVVESVGDQVTNLKEGDMIIPTYIGECQECENCVSGKTNLCMTYPIRLTGLMPDNTSRMSIRGQRLYHVFSCATWSEYMVIDANYPLKVDLSMDPAHASFISCGFSTGLGAAWKEAKVESGTSVAVFGLGAVGLGAISGAKMQGATKIIGIDKNELKREKGVAFGMTHFINPGDSVKSASELVKELSGGMGVDYSFECTGVPSLLTESLEATKVGTGKTIAIGIGAEPIVPLGLLAILFGRTLKGCAFGGLKTITDLSIIANKCHKKEFPLQELFTHEVPFADINKAFELLKQPNCVKVVIKM* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00204 374 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Rops3g00204 374 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Rops3g00204 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 333 IPR036291 -
Rops3g00204 374 CDD liver_alcohol_DH_like 8 373 - -
Rops3g00204 374 Gene3D - 179 317 - -
Rops3g00204 374 SUPERFAMILY GroES-like 4 190 IPR011032 -
Rops3g00204 374 Gene3D - 14 369 - -
Rops3g00204 374 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Rops3g00204 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Rops3g00204 374 SUPERFAMILY GroES-like 327 372 IPR011032 -
Rops3g00204 374 PANTHER ALCOHOL DEHYDROGENASE 6 366 - -
Rops3g00204 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00204 Rops-Chr3 2657392 2659489 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00204 35 366 Monolignol Biosynthesis Gene Families AT2G21730 26.488 8.30e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00204 K00121 - gmx:100798341 624.394