Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00202 ATGTGCCAATTTATTACTATTCATAAATGCAAAAAAGAGGATTTTGCGACTCGAAACGACATCGTAGGAGGCACTTTGCCCTTGATTGCTATATGCAATGGCTTAACGCGAAGCAAACATGTGCAAAGCGACGAACATGGTTTGGAAGCAAGAGTTTTGAGAGGGATTTCTGTATCAACTGAATCTGGAAAGAAGTTTGTCAAACATTCTATGATTCAGAACGCTGATATGAGACTCGAATCTGGGACTTGTAACGTGTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAACTCTCATGGGGTCAAAGGCTGAAGAATACACTGATGAAAACTGTCGCTTAGGGGAGGCTAATCAGTATTCTACAGATGAGGGTGATGGATCTTCTCTTAGGAGCAGAGCTTGTGAAAGATTGAAGCATGCTGTCAGTGAAACCAGTAACACGCCTAGTGTTAATTCCGGTCATGATTCTCTATCGGAAAATGCTGAGAGTAAACAGGCCTTGTCAGAAAAGTATCAGGATTCCAAGTGTTTAGAAGGTCTTGAAGATAGCACTTCTTGTACCAGTAGAGCCAGTAAAGCTAATTTAGTGAGTGGTATCCATCAAACAAATTCGAACAGAATAAATATATCGTGTAGTTCAACTTCAGTTAGTCCATTAGGGACAGAAGGATCTGGAATTGGGCCATCTGTTGACATGTCTGGCTTGTCTGAGATTCTCTCTTCCAAAGATGCTGATATCCCGGAAAATTTGTCAGGATGCTGTATGGAAAATGTTGATTCATCATTGATCAAAGACAGAGAACCTATTATTGTTTCTGGTGACAAATCACTTGCAGATAAGGATAACCTTATTAATGGTACTGCCAAGGGTTCACTAAAAATACATCCAAAGTCAGAAGCTGATACTGACAATGATGTTGGCGATGCTAAAGATCATAAATATTCAGCCCATGATGGACAGCATGAGAAGGAAGAGGAGCTAGTTAAATCACCTGGCATACCTGTACCTCAATCAGAAGATGAGAGTGATGAATCAGATGTTGTTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATTCTGGTCGTGATGATCTACTTGCCATATGTAGTCGGTGCAGTGATGGTGCAGAGCACACCTATTGCATGCGGGAAATGCTTCAGAAGCTTCCCGAAGGGGATTGGTTATGTGAAGAATGCAAATATGCAGAGGAGACTGCAAATCAAATGCTGGATGTTGTAGATAAAAAAAGTCATAAAGTTAGTTCCACTTCACAAATTTCTGGCAAAAGGCCTTCTGAAGGTGTGGAAGTAACTACAACAGCCAAAAAGCTAGCACTTGAATCAAGCACAGGATCACCGAAGGGATCACCGAAGGCATTAAGCCCCAAGCGAATAGTTCCACTGTCACGAGAATCTTCATTCAAGAGCTCAGATAATGGAAAGGTGAAACCTGGTCAACAGATCCCCATTCGTAATCACCCTGGTGGTGATGGCAGAGAACTAGCTCGTTCTCTTTCCACTGGCCCTAGGAGTCAAACTGCAAGAAGTATGTTGTTGAAGTCTAATTCATTCAACAACTTCAATTCCAAGCCAAGAGTCAAACTTGTTGATGAAGTTGTTCCACAAAAGCAGAAAGGGGGTGGTGAACATATTTCTAAGAATATGGAGACACCTGCTAGGCTGATAAGCAAATCAATGTCATTCAAATCCTCAAATTTGGGCCGTGCTACTGAGTCAAAAGTTAAAATGCTCTCTCAGTCTGGAACAGCTCAGGATTTGAAAGGATCAAGACATGCAAAAGAATCAGGTGTATTTGACAGGAAATCTCTGTCTAGGATTGATCGGCCTGTCATTTGTTCAACCATGGCTAGTGCTGTTGTTTCCACCTCCAAGGGTGATCAGAAGCTAACACCTCGTGGTGAAACTGCTAAACCTTCTGCAGTTAACAACAATCGAGAGTTTAAGGTCAACCAAGATGGAAAATTAAGTTCATTATCGAAGTCTACGAATAATATAAGCCATAAAAGTCCAGAACCTCAAGTTATTTCAGGGAGAACATCAACCAGTGCGTATGAAACTCAACAGGATGGGCTGCCTCGATCACGAGAGATGGCAAATCAGGTTGACAAAACAAAAGATAGTACTAGTGATCATGTGAGGTCAGGTGTTACTAATGCTTCAAAAAGCCCATTTTGTCATAAATGTAAAGATTCTGGCCATGCTACAGAATGTTGCACAATTGGTGCTACACAGGAATTTGGTGCTGAAGTATCAGTCACTGCCACAAGTAGTTTGAAAGAGGAGATGAATAAAGGTAATATATTGAAAGCTGCAATCCAGGCAGCTTTGCTTAAAAGGCCTGAAATACACAAAAAGAAAGATGTACCTGATCAAACTGATGAGTTTCCTACATTGGGCACAGACTTGACATGTGAAGCCAGTTCTCAAGACCAAGTGTTGGTTTCCAACACATTGAAAAATAGTAGATCTGCTGAAGAAACTGATGTGAAGCAGGAAATCCTTGAGAATTCTACATTTGAAACTTCGAATTGTTCGTCTGCCAATGATTTGAAGCAACCTAACTTTTGTCCAACTGATTTTTGCTCTCAACTTAGAAAGTCAGATTCTGATGGTCCTGCTTCTGAGAAAGTGAGAGACTTGCCCAATCATGCTTTGGGAATCTCAAGTGTTATCTCAAAGATGTTAGCCATTCCAGAATATGAATACATCTGGCAGGGTGTCTTTGAAGTGCATAGAAGTGGAAATCCTCCCGACTTGTATACTGGAATTCAAGCACATTTATCCTCATGCGCTTCCCCTAAGGTTCTTGATGCTGTGAACAAGTTTTTACCCAAAGTTTCCCTACATGAAGTTTCTCGCCTGAGCACATGGCCTTCACAATTTCATCAAGGTGGCGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGATATTGAAAGTTACGAGGGACACTACAAGGGTCTATTGGATCGCATGGTTAGAAATGATTTAGCACTTAAAGGGACTTTTGATGGTGTTGAACTTCTCATATTCACATCCAATCAGCTTCCTGAAAATTCACAGCGTTGGAATATGTTGTTTTTCTTATGGGGCATATTTAGAGGGAGGAGGATTAATAGTTCAGATTCTGCAAAAAAGAATTGTATTCCCAGTTTGAATGTGATGCCAAATGAGAAGGATTTTCCAACTGCTGTCATGACTTTGTCTGAAACTCGATGTTCACCAAAGCGCATGGATGAAGAATCAATTGCTTGCGGTAAAGCTTGCAGTGCACTTCTTCCATCCACTTCCATTGAACAAGGTCATGTTATGGTAAGTAGGAATTTTGATACCAAAGAAACTATTTTTGACCAGACACATTTGGGTTCACAAGTAAACTTAGAGAGGCAAGATAGTCGAATCAACACCAAATCCACGTCAAGTATTCCGACAATCCATATGCAATTGTGCCAAGAAATGAATTCTACCGGTTTGACCCTGAAAGGTAGTGTATCAGAGCATGGAAAATGCAGAGAGTCTAAACCTCCTGAAGCAATAAGAACAAGTGTAAATAGTACAATTGTGGAAACAAAAACTAATTGTGATATTTCTGTGAAGCAAGAGAACTCCTTGTCTCCGAGGACTCCTTATGTTGGCACTCAAGATATAGGTTCTGCAAACAATGTCAGTAAGGATAAAATTTCAGAGAGAACGAACAATGATGAAAATCTACGAAGGCCTAAAAGGAAACAGATCGAAGATGATCTCAATATTAACGTGGAGGCAACATTTCAGGGAGACCTGACTGTAAAAGGGGTCAACTGTCGGCTACCTAATGATAAAAAAGTTCAAAATATAGATCTTTCAGATACAGTTATGGAGGCTTCTGCAGTTAGTTGTCAGAAAATACCTTGGAATAAGGTAAATGAAAAATTGGAAGACAGAGAAATTTCTAGCAAACTGCAGACAGGTTTCAGCGGAATTTATGGATGTTACAGTACTGGAGCTAGGGACCCTTCTAATGGCAGTTCCGCATCACTTTTTAATGAATTTGGTTCCTGTTCCTCAGTTGAGGACAAAAGATTCAAAGAAGATTGTGATGAGAAAATCATCCACGAGGACCTTGGAACGATGGAAAGAACCTTCTTTCCTGTTGATACACATAATAAAAATGACTCACGATTGATGCTGAATAGCATGTCACTGAAAGGGCCTCACGAGTATGGTGACCAATTTCAAGTTGGGATTCCAAATCTAGAGCTTGCTTTGGGGGGTGAAACGAAACAGTCACGGAAGAGTATGCTGCCTTTCTTTGTTGGGGAAGTTGACAAGAAAAATAACCTGGAAAAGACTCCAGATTTATTGGAAAATGAGCAAGAGGATGACAGTATTGCTGCATCGCTTTCCCTGTCTCTCTCCTTCCCATCTTCAAACGAGGAACACATAAAACCTGCTTCAAAAGCTGAGCATTTGCCTGATGGGCATCATGGGAATACTTCGTTGCTCCTTTTTGGGAGATTCACTGACAAATAA 4551 0.4067 MCQFITIHKCKKEDFATRNDIVGGTLPLIAICNGLTRSKHVQSDEHGLEARVLRGISVSTESGKKFVKHSMIQNADMRLESGTCNVCSAPCSSCMHLNRTLMGSKAEEYTDENCRLGEANQYSTDEGDGSSLRSRACERLKHAVSETSNTPSVNSGHDSLSENAESKQALSEKYQDSKCLEGLEDSTSCTSRASKANLVSGIHQTNSNRINISCSSTSVSPLGTEGSGIGPSVDMSGLSEILSSKDADIPENLSGCCMENVDSSLIKDREPIIVSGDKSLADKDNLINGTAKGSLKIHPKSEADTDNDVGDAKDHKYSAHDGQHEKEEELVKSPGIPVPQSEDESDESDVVEHDVKVCDICGDSGRDDLLAICSRCSDGAEHTYCMREMLQKLPEGDWLCEECKYAEETANQMLDVVDKKSHKVSSTSQISGKRPSEGVEVTTTAKKLALESSTGSPKGSPKALSPKRIVPLSRESSFKSSDNGKVKPGQQIPIRNHPGGDGRELARSLSTGPRSQTARSMLLKSNSFNNFNSKPRVKLVDEVVPQKQKGGGEHISKNMETPARLISKSMSFKSSNLGRATESKVKMLSQSGTAQDLKGSRHAKESGVFDRKSLSRIDRPVICSTMASAVVSTSKGDQKLTPRGETAKPSAVNNNREFKVNQDGKLSSLSKSTNNISHKSPEPQVISGRTSTSAYETQQDGLPRSREMANQVDKTKDSTSDHVRSGVTNASKSPFCHKCKDSGHATECCTIGATQEFGAEVSVTATSSLKEEMNKGNILKAAIQAALLKRPEIHKKKDVPDQTDEFPTLGTDLTCEASSQDQVLVSNTLKNSRSAEETDVKQEILENSTFETSNCSSANDLKQPNFCPTDFCSQLRKSDSDGPASEKVRDLPNHALGISSVISKMLAIPEYEYIWQGVFEVHRSGNPPDLYTGIQAHLSSCASPKVLDAVNKFLPKVSLHEVSRLSTWPSQFHQGGAKEDNIALYFFAKDIESYEGHYKGLLDRMVRNDLALKGTFDGVELLIFTSNQLPENSQRWNMLFFLWGIFRGRRINSSDSAKKNCIPSLNVMPNEKDFPTAVMTLSETRCSPKRMDEESIACGKACSALLPSTSIEQGHVMVSRNFDTKETIFDQTHLGSQVNLERQDSRINTKSTSSIPTIHMQLCQEMNSTGLTLKGSVSEHGKCRESKPPEAIRTSVNSTIVETKTNCDISVKQENSLSPRTPYVGTQDIGSANNVSKDKISERTNNDENLRRPKRKQIEDDLNINVEATFQGDLTVKGVNCRLPNDKKVQNIDLSDTVMEASAVSCQKIPWNKVNEKLEDREISSKLQTGFSGIYGCYSTGARDPSNGSSASLFNEFGSCSSVEDKRFKEDCDEKIIHEDLGTMERTFFPVDTHNKNDSRLMLNSMSLKGPHEYGDQFQVGIPNLELALGGETKQSRKSMLPFFVGEVDKKNNLEKTPDLLENEQEDDSIAASLSLSLSFPSSNEEHIKPASKAEHLPDGHHGNTSLLLFGRFTDK* 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00202 1516 MobiDBLite consensus disorder prediction 297 332 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 630 726 - -
Rops3g00202 1516 SMART PHD_3 357 404 IPR001965 -
Rops3g00202 1516 SUPERFAMILY FYVE/PHD zinc finger 344 408 IPR011011 -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 143 167 - -
Rops3g00202 1516 ProSiteProfiles Zinc finger PHD-type profile. 355 406 IPR019787 -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 647 705 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 1216 1255 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 141 167 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 707 721 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 1481 1501 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 1240 1255 - -
Rops3g00202 1516 PANTHER - 355 1070 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 448 517 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 291 349 - -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 1216 1239 - -
Rops3g00202 1516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 418 IPR013083 -
Rops3g00202 1516 MobiDBLite consensus disorder prediction 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00202 Rops-Chr3 2638893 2648574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00202 354 415 C2H2 Transcription Factor Family AT3G01460 37.097 9.92e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00202 - - gmx:100781187 2063.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00202 3 2638893 2648574 Rops1g02354 1 45869771 45883170 ECH
Rops3g00202 3 2638893 2648574 Rops3g00202 3 2638893 2648574 ECH