Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00198 ATGAATAGCAGTGGGGGCAGTAGCGGAGGGATGATGATGGGTTTCAGTAATAGTTATAGCAGGTCGCCTTTCACAGTGTCTCAGTGGCAGGAATTGGAGCACCAAGCTTTGATCTTCAAGTACATGGTTGCTGGTCTTCCTGTTCCTCCTGATCTCGTCCTTCCCATTCAGAAGAGCTTCGACTCTATCTCACATAGCTTCTTTCAACACCCTACTTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGAAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACACAGTCATCATCCACTGTGACATCAATGACTGTCACTGGTGGCAGCAGCAGAACTGGAAACTTCCAGAACCTTCCCACAAATGCCTTTGGTAATCTCCAAGGTACTGGTTCTGGAACCAACCATACCGACTATCATCTAGATTCGATTCCCTATGGGATTCCGAGTAAAGAATACAGGTATCTTCAAGGACTTAAATCTGAGGGTGGAGAACATAGCTTCTTTTCTGACGCTTCAGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTTGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAATAATAATTCCATGTTGCAGAGTGATTATCCCCAGCATTCATTTTTATCAAGTGAATATGTGTCAGGAGAACCTGTGAAGGAGGAGGGCCAGCCTCTTCGACCCTTTTTTAATGAATGGCCTAAAAGCAGGGAATCATGGTCTGGTTTGGAAGATGAGAGATCCAACCAAACAGCCTTTTCTACAACGCAACTCTCAATATCCATTCCCATGTCATCTTCTGACTTCTCTACAACGAGCTCTCAATCCCCACATGATAACTGA 987 0.459 MNSSGGSSGGMMMGFSNSYSRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHSFFQHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTSMTVTGGSSRTGNFQNLPTNAFGNLQGTGSGTNHTDYHLDSIPYGIPSKEYRYLQGLKSEGGEHSFFSDASGSNKVLQMESQLENTWPLMSTRVASFSTSKSNNNSMLQSDYPQHSFLSSEYVSGEPVKEEGQPLRPFFNEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSSDFSTTSSQSPHDN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00198 328 Pfam WRC 85 127 IPR014977 -
Rops3g00198 328 ProSiteProfiles QLQ domain profile. 23 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops3g00198 328 MobiDBLite consensus disorder prediction 125 153 - -
Rops3g00198 328 PANTHER GROWTH-REGULATING FACTOR 5 11 316 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops3g00198 328 SMART QLQ_2 22 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops3g00198 328 MobiDBLite consensus disorder prediction 116 153 - -
Rops3g00198 328 ProSiteProfiles WRC domain profile. 84 128 IPR014977 -
Rops3g00198 328 Pfam QLQ 23 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00198 Rops-Chr3 2605097 2614734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00198 1 127 GRF Transcription Factor Family AT3G13960 58.015 2.64e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops3g00198 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00198 - - gmx:100787226 530.406