Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00170 ATGGACCCAGGTTCACAGTACCAGGGGCCGAAAGAGAGGAACTGGGAAGCCAAGGGCTTGCAGCAGGTCCATTTTCTTAAGGATTGTGCCGTGTTTACTGAATCATGCAACTTCATCAATGCAGATATTGGACTGTACCATCTTTCTCAACTTGCCTCCCCTGATGGCGATTCAATGCAACGGGTAGCCACTTATTTCAGTGAGGGACTAGCATGTTGCCAACTGGTCAAAAATTTGCGTGGTGTACCTAAAGTTCTCCGTTTGTCAAAAAAATTATCAACAACAGAAGAGTTACTTGTCAAGAAATTATTCTTTGATTTGTGTCCATTTTTAAAGATCTCATACATGACCACAAATCAAGCCATTATTGAAGTCATGGAAGGGGAAAAAGCAATTAATATCCTTGATCTTAGTGCATCTGATGCCACTCAGTGGATTTATCTTATGCATAGTTTGAAAGAGCGTTTCCCAAACCACCCATATCCAAAAATTGCAGTCACAGGCATACATGAGAAGGAGGAGGTCTTAGATCACATGGAATTACGTTTGAGACTTGAAGCTGAAGGGTTGAATTTTGATTTCCAATTCAATCCTATTGTAAGCACTTTGGAGAACCTTGACCTTGAAACTTTGCCTGTCAATAAGGGAGAGCCTCTTGCTATTAGCTGTGTACTTCAGCTTCACTCTCTTCTGGCCACTAATGATGAAACAGTCAAAGTCAGGATGAATCAATGGACTTATGCACAAATGCTAGGGAAACAGAAGAAGAAGAAGATCAATCCAAGTCCTGTATCAGCACTATCACCATTTTCTCTCAGTCCACCTAAAATGGAGTGTTTTCTTAATGGCTTGTGGAAGCTCCAACCTAGAGTGCTAGTGATCACTGAGCAAGAAGCCAATGTTAATGGATCTACTTTGACAAAAAGGGTGAACAAAGCTTTGAACTTTTATGGTGCACTTTTTGATTGCTTGGAATCTACCTTGTCTAGGACATTGGTAGACCGAACCTTACTAGAGAAGATGCTACTAGGGGAGCAAATAAAGAACATCATGGCATGTGAAGGAGTTGAGAGAAAGGAGAGGTATGAGAAACTTAAAACATGGATACCAAGACTTGAATTGGCTGGATTTGAGAGGGTCCCTATCAGCTCAAATGGGATGTTACAGGCACAAAAGCTGTTGCAAAGCTATGTACATGGATATCAGATCCTTCAAGACAACAACTGCTTGTTTATCCGTTGGAATGATCAGCCTCTCTTCTCTGTATCAGCTTGGAGATTTTAG 1284 0.412 MDPGSQYQGPKERNWEAKGLQQVHFLKDCAVFTESCNFINADIGLYHLSQLASPDGDSMQRVATYFSEGLACCQLVKNLRGVPKVLRLSKKLSTTEELLVKKLFFDLCPFLKISYMTTNQAIIEVMEGEKAINILDLSASDATQWIYLMHSLKERFPNHPYPKIAVTGIHEKEEVLDHMELRLRLEAEGLNFDFQFNPIVSTLENLDLETLPVNKGEPLAISCVLQLHSLLATNDETVKVRMNQWTYAQMLGKQKKKKINPSPVSALSPFSLSPPKMECFLNGLWKLQPRVLVITEQEANVNGSTLTKRVNKALNFYGALFDCLESTLSRTLVDRTLLEKMLLGEQIKNIMACEGVERKERYEKLKTWIPRLELAGFERVPISSNGMLQAQKLLQSYVHGYQILQDNNCLFIRWNDQPLFSVSAWRF* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00170 427 ProSiteProfiles GRAS family profile. 13 426 IPR005202 -
Rops3g00170 427 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 422 IPR005202 -
Rops3g00170 427 Pfam GRAS domain family 23 426 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00170 Rops-Chr3 2342465 2344941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00170 16 426 GRAS Transcription Factor Family AT1G50420 44.138 5.30e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g00170 GRAS 4.2e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00170 - - vra:106778126 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00170 3 2342465 2344941 Rops3g00170 3 2342465 2344941 ECH