Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00162 ATGGAGAAGTACCTGAGAGAAAACTTCAACGTGCAGCCCAAGAACCCCTCAGAAGCCGCCCTTCGCCGATGGAGATCCGCCGTCTCCGTCGTCAAGAACCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGTGCCGACGCCGAACAAAAACGCAAAAAACTCCAGGAAAAGATACGGGTGGCTCTCTATGTGCAAAAAGCAGCGTTGCATTTTATTAACGCTGCCGCTGGGAGTCAAGGTGGTTACATGCTCTCCAAAGAGATTCAGGAAGCTGGTTTCGGAATTGAGCCCGATGAATTAGCATCTATTGTTCGATCCCATGACACCAAATGTTTAGAACATCATGAAGGAGTTGAAGGAATAGCAAAAACTGTCCGTGTGTCACTGCAAGAGGGCGTTAGTTCATACGATGTACAACATAGACAAAATATCTATGGTTTTAACCGCCATGCAGAGAAGCCCTCTAGAAGTTTTTGGATGTTCGTTTGGGATGCAATGCAAGACTTGACTCTAATCATCCTTATGGTATGTGCTGTGATTTCAGTAGGTGTTGGAATCTCAACTGAAGGTTGGCCAAAAGGTATGTATGATGGAGTGGGAATCATACTATGTATTATTTTAGTGGTCTTTGTCACTTCCATCAGTGACTATAAACAGTCTTTGCAATTTAAGGATTTGGATAAAGAAAAGAAAAATGTCAGCATTCAAGTCACGAGAGATGGTAGAAGACAAAAGGTTTCAATCCATGAACTGGTGGTGGGAGACATAGTCCTTCTGTCCATAGGAGATATAGTTCCAGCAGATGGGTTATTCATATCAGGTTTTGGCTTATTAATCGATGAATCAAGTCTATCAGGTGAGAGTGAGGCTGTGAATGTTGACCAGCAGAAGCCTTTTCTTCTATCCGGGACCACGGTGCAAGATGGGTCTGCTAAGATGCTAGTCACTTCCGTTGGTATGAGGACTGAATGGGGAAGGTTGATGGAAACTCTGAACGAAGGGGGAGACGATGAGACACCTCTTCAGGTCAAATTAAATGGGGTTGCGACCATTATTGGCAAGATAGGCTTGGGTTTTGCCCTGCTGACATTCCTCGTTCTTACTGGCAGGTTTTTGTTGGAGAAAATAGCTAACCATAAGATCAAAGAATGGTCTCTAAATGATGCATCCATGCTTCTCAATTTCTTTGCTACTGCTGTCATTATTATAGTTGTGGCAGTTCCCGAGGGGCTGCCTTTGGCAGTAACACTAAGCCTTGCATTTGCAATGAAGAAACTGATGAATGATAAGGCACTAGTCAGGCACCTCTCTGCATGCGAGACAATGGGCTCTGCCGGTTCTATTTGCACGGATAAGACGGGGACTTTGACTACAAATCACATGGTCGTTGACAAAATATGGATTTGCGAACAAACTAATGCAATTAAAAGCGGCAACAGTGATAATGGGTTGAAGAACTCATTGTCTGAAAAGACATTTGATCTCCTTTTGCAGTCCATATTCCAGAATACCGGCTCAGAGGTAGTCAAAGGGCCAGATGGAAAGAACAAGGTCATGGGTACTCCAACCGAGTCGGCATTGCTGGAATTTGGTTTGCTTTTGGGAGGTGATTCTAAGTTTTATAATGAGAAGTATAAGATACTGAAGATTGAACCTTTCAATTCAAACAAAAAAAAGATGTCAGTGCTTGTGGCTCTTCCTGATGGCACCAACAAGTCTCGAGCATTTTGTAAAGGAGCATCAGAAATAGTTGTGAAAATGTGTGACAGAGTTGTTAATGCAGATGGCGAAGCCTTCCATTTGAATGAACAACAAAGAAATAGCATCACAAAAGTTATCAATTGTTTTGCTTCTGAGGCTCTGAGAACACTCTGCATAGCCTTCAAGGATATTGAAGGATCCTCTGAGGGTGATAGTATTCCGGAGGATAAGTACACGTTAATAGCTATTATTGGGATCAAGGATCCAGTGAGGCCTGGAGTAAAGGAAGCTGTTAAGACTTGTCTAGCAGCTGGGATTACCGTTAGAATGGTAACTGGTGACAACATAAATACTGCTAAAGCAATAGCTAGAGAATGTGGCATCTTGACAGATGGATTGGCCATAGAGGGACCAGATTTCCGGAACAAGACCCGGAAAGAAATGCAAGAGATAATACCAAAAATACAGGTAATGGCTCGATCCTTGCCTCTTGACAAGCACACCTTGGTGACCCATTTGAGAAATGACTTTAATGAAGTTGTGGCAGTAACTGGGGATGGGACCAATGATGCTCCAGCATTGCATGAGGCTGATATTGGATTTGCTATGGGTATTGCTGGCACAGAGGTTGCAAAAGAGAATGCAGATGTGATTGTAATGGATGATAATTTCACCACCATAGTGAATGTTGCCAGATGGGGCCGTTCTGTTTATATTAATATACAAAAGTTTGTCCAGTTCCAGTTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTTGTTTCAGCATGCGTGTCGGGCTCTGCTCCTCTTACTGCTGTTCAGATGCTTTGGGTAAACATGATCATGGACACTCTCGGTGCATTGGCACTGGCAACAGAACCTCCCCATGATGGGCTGATGAAGAGGCCACCTGTAGGAAGGGACGCCAAATTCATCACCGGGGTCATGTGGAGGAACATTATTGGTCAGAGCATCTATCAAACTATTGTCCTTTTGGTTCTCAAATTTCGTGGGAAACAGATTCTCAAGCTCAATGGACCTGATGCCACCTCTGTTCTGCACACCGTCATTTTCAACACCTTTGTGTTTTGCCAGGTATTCAACGAGGTAAACAGCCGTGACATGGAGAAGATTAATGTTTTTCGAGGCATGTTCAGCAGCTGGATTTTCCTGATGGTCCTGGCCTCAACGATATGCTTTCAATTCATAATAGTACAATATCTGGGTACTTTTGCTCAAACAGTGCCACTGAGCTGGGAGTTGTGGTTAGTCAGCGTCATGATTGGTGCGGTAAGTTTACTCGTAGCTGTTGTCCTAAAGTGCATCCCAGTTCCTGTGAGTAATTATGTCGCCACTCATCATGATGGTTACGAGCAGCTTCCCAGTGGACCAGAGCTGGCATGA 3117 0.4415 MEKYLRENFNVQPKNPSEAALRRWRSAVSVVKNPRRRFRMVANLAQRADAEQKRKKLQEKIRVALYVQKAALHFINAAAGSQGGYMLSKEIQEAGFGIEPDELASIVRSHDTKCLEHHEGVEGIAKTVRVSLQEGVSSYDVQHRQNIYGFNRHAEKPSRSFWMFVWDAMQDLTLIILMVCAVISVGVGISTEGWPKGMYDGVGIILCIILVVFVTSISDYKQSLQFKDLDKEKKNVSIQVTRDGRRQKVSIHELVVGDIVLLSIGDIVPADGLFISGFGLLIDESSLSGESEAVNVDQQKPFLLSGTTVQDGSAKMLVTSVGMRTEWGRLMETLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFLVLTGRFLLEKIANHKIKEWSLNDASMLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGSICTDKTGTLTTNHMVVDKIWICEQTNAIKSGNSDNGLKNSLSEKTFDLLLQSIFQNTGSEVVKGPDGKNKVMGTPTESALLEFGLLLGGDSKFYNEKYKILKIEPFNSNKKKMSVLVALPDGTNKSRAFCKGASEIVVKMCDRVVNADGEAFHLNEQQRNSITKVINCFASEALRTLCIAFKDIEGSSEGDSIPEDKYTLIAIIGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPDFRNKTRKEMQEIIPKIQVMARSLPLDKHTLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFTTIVNVARWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPVGRDAKFITGVMWRNIIGQSIYQTIVLLVLKFRGKQILKLNGPDATSVLHTVIFNTFVFCQVFNEVNSRDMEKINVFRGMFSSWIFLMVLASTICFQFIIVQYLGTFAQTVPLSWELWLVSVMIGAVSLLVAVVLKCIPVPVSNYVATHHDGYEQLPSGPELA* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00162 1038 CDD P-type_ATPase_Ca_PMCA-like 141 887 - -
Rops3g00162 1038 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1015 IPR023298 -
Rops3g00162 1038 FunFam Calcium-transporting ATPase 771 1017 - -
Rops3g00162 1038 SFLD p-type atpase 434 806 IPR044492 -
Rops3g00162 1038 SMART Cation_ATPase_N_a_2 115 189 IPR004014 -
Rops3g00162 1038 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Rops3g00162 1038 PRINTS P-type cation-transporting ATPase superfamily signature 652 663 - -
Rops3g00162 1038 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Rops3g00162 1038 PRINTS P-type cation-transporting ATPase superfamily signature 674 684 - -
Rops3g00162 1038 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Rops3g00162 1038 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Rops3g00162 1038 Coils Coil 40 60 - -
Rops3g00162 1038 PANTHER CATION TRANSPORTING ATPASE 77 1017 - -
Rops3g00162 1038 FunFam Calcium-transporting ATPase 462 659 - -
Rops3g00162 1038 FunFam Calcium-transporting ATPase 214 335 - -
Rops3g00162 1038 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Rops3g00162 1038 NCBIfam HAD-IC family P-type ATPase 549 700 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00162 1038 NCBIfam HAD-IC family P-type ATPase 719 842 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00162 1038 NCBIfam HAD-IC family P-type ATPase 394 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00162 1038 SFLD C1.7: P-type atpase like 434 806 - -
Rops3g00162 1038 Pfam E1-E2 ATPase 237 430 - -
Rops3g00162 1038 Gene3D - 135 335 - -
Rops3g00162 1038 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Rops3g00162 1038 Gene3D - 16 76 - -
Rops3g00162 1038 NCBIfam calcium-translocating P-type ATPase, PMCA-type 112 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops3g00162 1038 FunFam Calcium-transporting ATPase 652 799 - -
Rops3g00162 1038 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00162 1038 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00162 1038 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00162 1038 Pfam Cation transporter/ATPase, N-terminus 116 184 IPR004014 -
Rops3g00162 1038 Gene3D - 462 659 IPR023299 GO:0000166
Rops3g00162 1038 SUPERFAMILY HAD-like 451 859 IPR036412 -
Rops3g00162 1038 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 664 IPR023299 GO:0000166
Rops3g00162 1038 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
Rops3g00162 1038 FunFam Calcium-transporting ATPase 16 76 - -
Rops3g00162 1038 Gene3D - 167 1013 - -
Rops3g00162 1038 Gene3D - 449 799 IPR023214 -
Rops3g00162 1038 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Rops3g00162 1038 Pfam haloacid dehalogenase-like hydrolase 451 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00162 Rops-Chr3 2220140 2227519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00162 57 1035 Primary Pumps ATPases AT3G57330 70.612 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00162 K01537 - gmx:100805063 1793.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00162 3 2220140 2227519 Rops3g00162 3 2220140 2227519 ECH