Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00147 ATGGGGTACCTCTACCTTTCTTCTTGCAGAGCTGAATCCGCCGTCTCAACCTCCAATTCCGTGTCTTCTTCTTCTTCTTCTTCCAAACCAAACAAAGAGAAAGAGAAGAGCATCAAGATTCAACAGTTTCAGTACAGCGACCTTGAAGCTGCCACCAATGGCTTCTCAGAACGGAAGCTCCTTGGCAAAGGAAGCCATGGCTATGTCTACAAAGCCGTTGTTCATGGCCGCCCCGTTGCAGTGAAAAGACCTTCTAGACCTCACCACTCTCTTCTTCCACGACCCTTCCCTTCTTCTTCTTCCTCTGCACCTGAGATCACCAACGAGCTTGACAACGAGATCGACATCTTGTCCAAAATTCAGAGCCCCGGATTGGTTAATTTGGTAGGTTTCAGCAATGATTCAAAAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGTACCCTTTTTGATGTTCTTCATTCCTCTTCTAGACCTCCCAATTGGGGTAGGAGAATTCGTTTAGCTTTGCAAACTGCAAAAGCTATCGATACCCTTCATTCCTCAACCCCACCAGTGATTCATAGGGATATCAAGTCTGCAAATGTTCTCATAGACCGCAACTACAATGCCAGGTTAGGTGATTTTGGTTTGGCTTTAAGGGGCCATGTTGATGACTATAGACTCAGGTCTACTCCACCTGCTGGCACTATGGGGTATCTTGATCCTTGTTATGTGACTCCTGATAATTTGAGTACTAAGACTGATGTGTTTAGTTTTGGGATTTTGTTGTTGGAGATTATCAGTGGTAGGAAGGCGATTGATGTCACATATTCACCACCATCTATTGTGGATTGGGCTATTCCTCTTATCAAGAAAGGGAAGTTGCTTGCTGTTTATGATCCTAGAATAGCTCCTCCTAAGGATCCGGTTGTGAGGAAGCAGCTGGCTGTGATTGCAGCAAAATGTGTGAGGTCTTGTAGGGAGAGAAGGCCTTCCATGAATGAGATTGTTAATTGGCTTTGTGGGTTGTGTAAATTGGTGCCTCTTCATTCATGGAATGGTTTTAATAACCCTTGCATGATGGTTGAGACTGTGGGACGCCCGGTTGAAGCAAGAAATGCTCAATCCTGTTCAAGGCTTGAAGGTGTGGAAGAAGGAAATTTTGGTGCTTTGGATGCCAGATTGTCAAAGTCTGCTGCAATGAGTAGATATTCCAGGAGAGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACCTTATGGCTACCACTGAGGCGCCTGAATTTCTAAGAGATGCTGATGGAGTGGTGCATAGTTCTAAACCTGCTGACCAAGTTTCTAGCTCAAGGTTTGGCAGTGGAAGATATTTCATAAGAGGCAGAAATCTATACCGGCCTTGTGGTACTGATAAGGATGCATTTGGCTTGAGTAAAGGCCAGATTGTTGTTGGTGAGACTTCAAAACAGGATGGGGTTTCTGGTTCAAATTTGAATTCTCTGGCAGCTGAGGTTATCTAG 1506 0.4489 MGYLYLSSCRAESAVSTSNSVSSSSSSSKPNKEKEKSIKIQQFQYSDLEAATNGFSERKLLGKGSHGYVYKAVVHGRPVAVKRPSRPHHSLLPRPFPSSSSSAPEITNELDNEIDILSKIQSPGLVNLVGFSNDSKDRLLVVEFMSNGTLFDVLHSSSRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRNYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDVTYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMNEIVNWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNAQSCSRLEGVEEGNFGALDARLSKSAAMSRYSRRVYSDLGFSSNLMDLMATTEAPEFLRDADGVVHSSKPADQVSSSRFGSGRYFIRGRNLYRPCGTDKDAFGLSKGQIVVGETSKQDGVSGSNLNSLAAEVI* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00147 501 ProSiteProfiles Protein kinase domain profile. 55 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00147 501 PANTHER OS01G0253100 PROTEIN 15 337 - -
Rops3g00147 501 SMART serkin_6 55 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00147 501 MobiDBLite consensus disorder prediction 12 28 - -
Rops3g00147 501 Gene3D Transferase(Phosphotransferase) domain 1 145 343 - -
Rops3g00147 501 Gene3D Phosphorylase Kinase; domain 1 25 144 - -
Rops3g00147 501 FunFam Serine/threonine-protein kinase-like protein 145 348 - -
Rops3g00147 501 Pfam Protein kinase domain 56 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00147 501 SUPERFAMILY Protein kinase-like (PK-like) 29 335 IPR011009 -
Rops3g00147 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Rops3g00147 501 MobiDBLite consensus disorder prediction 12 37 - -
Rops3g00147 501 ProSitePatterns Protein kinases ATP-binding region signature. 61 82 IPR017441 GO:0005524
Rops3g00147 501 MobiDBLite consensus disorder prediction 82 105 - -
Rops3g00147 501 FunFam Serine/threonine-protein kinase-like protein At1g28390 23 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00147 Rops-Chr3 1931869 1933786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00147 6 335 Receptor kinase-like Gene Family AT3G59420 40.882 1.63e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Rops3g00147 Pkinase 3.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00147 - - vum:124832395 813.142