Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00143 ATGCTTCCTTCTTGCAGTATGAAGCGAACACTTGCAAGATACAACAAATGCATGGATTCTTCAGAGGCAGCAGTTGTGGAATATAAGACAGAGAAGGAAGATTCTAAGATGGTGGAGAGTCTTAAAGATGAAATTGCAAAGCTAGAAACAAAGCAATTACGGCTGCTGGGTAAGGATTTAACAGGATTGGGCTTAAAGGAACTGCAACATCTAGAGCAGCAACTTAATGAAGGGTTATCATCGGTTACGGGGAGGAAGGAGGAATTACTTATGGAGCAACTGGAGCAGTCTAGAGTACAGGAGCAGAGGGCTATGCTGGAGAATGAAACTTTGCGGAGACAGGTTGAGGAGCTTCGATGTCTGTTTCCACTAACAGAACATGTAGTCCCAACTTATCTTCAGTATCACTATATGGAAAGAAAGAATGCCTTTGTAGATAATGGTGTTAAATGTTCCAACATGGGCAGTAACTTTGCAAATGAGAAAGGAGATTCAGACACCGCATTGCATTTAGGGTTGTCGACTGATGTTCATCACAAGAGGGAGGCACCCGAGAAAGAAACCTTTTCTAATGATTCTTAG 582 0.4227 MLPSCSMKRTLARYNKCMDSSEAAVVEYKTEKEDSKMVESLKDEIAKLETKQLRLLGKDLTGLGLKELQHLEQQLNEGLSSVTGRKEELLMEQLEQSRVQEQRAMLENETLRRQVEELRCLFPLTEHVVPTYLQYHYMERKNAFVDNGVKCSNMGSNFANEKGDSDTALHLGLSTDVHHKREAPEKETFSNDS* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00143 193 Coils Coil 31 58 - -
Rops3g00143 193 Coils Coil 94 121 - -
Rops3g00143 193 Pfam K-box region 32 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops3g00143 193 ProSiteProfiles K-box domain profile. 31 121 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00143 Rops-Chr3 1888826 1891488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00143 4 193 MADS-box Gene Family AT5G13790 46.073 5.47e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00143 - - zju:107417456 256.144