Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00141 ATGGGCAAAACAACTTGTTCTGTTTTTCTATCCTTTCTCATTCTCTCATTCTTTGTGGTTGAAATCCATGGAAACAGACAAGTTCGAGCCCTTGACAATCTCCAAAAGTCCAAGTTCAGAGGAAGTTCACAAATTGATAAGAGTGACTTTGAGGTACAAGAACTTGTTCATTATGATGCCATTGTTCATTCTCAAGAGGGCATGAAAGAGAAAGATAGGATTGAGAGGCTTCCAGGACAACCCCAGGTCACGTTTTCTCAGTATGGAGGGTATGTCACTGTTGATCAATTGGCTGGAAGTGCTTTTTATTACTACTTTGTTGAAGCTCAGCGTTCTAAAGAAACATTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTAGCCTATGGAGCAATGCAAGAACTTGGACCTTTCCGAGTAAACAGTGACGGCAAAACATTACACATAAATAGATATTCATGGAACAATGCTGCAAATGTTTTGTTCCTGGAGTCACCTGTTGGAGTAGGATTTTCTTATTCTAACAGATCATCAGATTATAAGACCAATGGAGATAAGAAAACAGCTGCAGATAACTATTTATTCTTGGTGAATTGGTTGGAGAGGTTTCCTGAATATAAGAACAGAGATTTCTATATTTCTGGGGAGAGCTATGCTGGGCATTATGTTCCTCAATTAGCACAAACTATTCTCTACCATAACAAAATGGCAAACAAGACAATCATCAACCTCAAAGGTATCTTGATTGGGAATGCAGTGATCAACGATGACACTGACGTCATAGGAATGCTCGATTTTCTTGCTAGCCATGCAATCATCTCAGACGCAGCAGCATATGATTTCAACAAATTATGTGATTTCTCATCACAAAATCAGTCAAGTGAATGCAATGCAGCCGCAGATGAAATTGAGAACGATATTGCATTCATTGATTTATACAACATTTATGCTCCAGTTTGCAAAAATAAAAATCTCACGACCCTGCCCAAGAAGAGCACTATTGTCACTGATCCATGTAGTGACTTTTATGTGTATGCATATCTTAATAGAAGAGAGGTTCAAGAGGCCCTCCATGCCAATGTCACCAAACTCAAATATGACTGGGAACCCTGCAGTGATGTCATTGCAAAGTGGGTTGATAGCTCTTCAACTGTCCTCCCCATTTTACATGAATTCCTCAATAATGGCCTTAGGGTTTGGATTTTCAGTGGTGACGTAGATGGAAGGGTTCCTGTTACTTCAACCAAGTATTCTATCAACAAGATGAAGCTTCCCATTAAAACTGCATGGCGCCCTTGGTTTGCCTATGGAGAGGTTGGTGGCTATACAGAAGTATACAGAGGAGGCCTAACATTTGCTACGGTGAGAGAAGCAGGGCATCAAGTACCAAGTTATCAACCAGCAAGAGCCCTTACTTTGATCAAAAGTTTCTTAGATGGCACTCCTCTTCCCAATCCTAAAATAAATGCCTAG 1485 0.404 MGKTTCSVFLSFLILSFFVVEIHGNRQVRALDNLQKSKFRGSSQIDKSDFEVQELVHYDAIVHSQEGMKEKDRIERLPGQPQVTFSQYGGYVTVDQLAGSAFYYYFVEAQRSKETLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHINRYSWNNAANVLFLESPVGVGFSYSNRSSDYKTNGDKKTAADNYLFLVNWLERFPEYKNRDFYISGESYAGHYVPQLAQTILYHNKMANKTIINLKGILIGNAVINDDTDVIGMLDFLASHAIISDAAAYDFNKLCDFSSQNQSSECNAAADEIENDIAFIDLYNIYAPVCKNKNLTTLPKKSTIVTDPCSDFYVYAYLNRREVQEALHANVTKLKYDWEPCSDVIAKWVDSSSTVLPILHEFLNNGLRVWIFSGDVDGRVPVTSTKYSINKMKLPIKTAWRPWFAYGEVGGYTEVYRGGLTFATVREAGHQVPSYQPARALTLIKSFLDGTPLPNPKINA* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00141 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 166 IPR001563 GO:0004185|GO:0006508
Rops3g00141 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 177 IPR001563 GO:0004185|GO:0006508
Rops3g00141 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Rops3g00141 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 203 228 IPR001563 GO:0004185|GO:0006508
Rops3g00141 494 SUPERFAMILY alpha/beta-Hydrolases 75 488 IPR029058 -
Rops3g00141 494 Gene3D - 389 484 - -
Rops3g00141 494 Gene3D alpha/beta hydrolase 68 326 IPR029058 -
Rops3g00141 494 FunFam Carboxypeptidase 68 326 - -
Rops3g00141 494 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 73 471 IPR001563 GO:0004185|GO:0006508
Rops3g00141 494 Pfam Serine carboxypeptidase 78 484 IPR001563 GO:0004185|GO:0006508
Rops3g00141 494 ProSitePatterns Serine carboxypeptidases, serine active site. 217 224 IPR018202 GO:0004185
Rops3g00141 494 Gene3D - 343 379 - -
Rops3g00141 494 FunFam Carboxypeptidase 389 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00141 Rops-Chr3 1875328 1879862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00141 351 487 Calmodulin-binding Proteins AT2G22960 31.387 1.19e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00141 K16297 - gmx:100783864 789.645