Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00124 ATGAAGAGATTGAGGTCTAGCGAGGATCTTCACTCTTATGGTGATAAGAATGCTGGCAAGGATTCGAATGTGAATCGTTCGTTTTCAACTTCTGCGCAGCGAAGTTTTTACTACAAGCCAGATAATGTGCGCAAGGGTTTGTTGTCTTCGTCATCGTCACGTTACGAAAGGGATCGGACGGTGGACGAGGATCGAGAAGGTTCTCGGTTGGTTCGCAAGCGATCGGAGCATGATTTTGAGGGTTTTGATAGGAGGAAAGGGTTCGATCGGTATAGGGATAGTGGTTATGTCGGTGGAGGTGGTGATAGGGGTTTGATTCACCGGTCGGAGAGTTTCTGTGGTTCTCGGAGGGATTTTCCGAAGGGGTTTCGGTCGGAGAGGGACCGGTCGCGAAGGGAGGGAAGTGTTTCGTCGTGGCGGAGAGGTTTGAAGGATTTTGATGAGAGTGGTAGAGGGGGTAGAGTTGTTGGAGGAGTGGAGGAGAGAGTTGTGAGGTCTCCAAAGGGTTTGAGGGATGTGAAGTCTCCAACTTGGTCGAGGGATGTGAAGTCTCCAACTTGGTCGAGGGATTCTGAGAGTGAGCAATCTAAGAAGAGATCTTCTTCTCCGAGGGGGTTGAGAGATGCCAAGTCTAAGTCAAAGTCACCAACTTGGTCAAAGGATTCGGAGAGTGAGCAGTCCAAGAGTGTTGAGGTGAAGAAAACTGAGGAGGTGCAGGTTCAGAGTGGAAGTAGTAGTAGTGAAATGGAAGAGGGGGAGTTGGAACCTGAACCTGTGCCTCAAACTGGAGCCGCCACTGAACCCCAAGTGGCTCAGAAAGATGATGCCCCTGGAAGTGAAGACCAGCCCTCTGTTCCTCCTCTTGAAACTGATGATAGGCAAGTTCAGAATGAATGTCAACCCAATGACACAGATACTGCTATGGAAGAAAGACAGGAATTAACGAGTAAGGAAGAGGCAAAACCTTATGAGGACATTGATTCTGAGGTGAAAGATGCTGAGGAAGAAGCTGATGATAGGATGCCAGATGTTGAAGATGATTCAACCAAGAAAATGCTTGTTACTGAGACTGAACTTGACACCATGGGTAGTGATGATGATATAAAAGACGTCGGTTTGAATGGTGATACTCAGTGCAAGGAGGAAACAGAAAAGGGAGTAGATTTGTTTAATGAAGAGGAGCATAAGCAGGAGAAGGGTGTGGATCTAGAAACCAGCACAGATGTTGACAAACCTGAGGTAAACGATGAAGTCTCAACCGAAAATGAAGTTCCCAAAGAAGAAAACAGAGAAATGATGATGGAGAGTGTGACCAACAATGTAAAGGATAAAGGCAAAAGTATCTCAGTCACACCTAATGAGGTTGCTCAACCTTCAGAAGATGGCTTATGGATTGATAGAGGGCCAAGAGATCTCACAACATACTCTGCTGATGTAATGGAAGGTCCAAGCACTAGAGGATTTGAGTTGTTTTCCAGATCTCCTGTAAGAAAAGTGGAAAAACCAGACCACTCCGTTCTCAACAAGCAGAAGGATGATGGTCTTGCAATGGAGCAGCTTGATCTTACTCTTAGCTTGCCAAATGTTCTGTTACCTATTGGTGCTCATGAAACTACAACACAAGTCCCTGGATCCCCCAGTCAGGCACGGAGTGTGCAGTCTTTAACTAATACATTTTGTACTAATTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCCCAGTCATTCCATCACAATCCAAGCTGTTCTCTGACAAAAAATTCAGTGGACTATGAACAGTCTGTTGGCAGTCGCCCCTTATTCCAGGGATTCGATTGGCAAGGCCAGTCTCAGAGTGATCCCAAACAGAAAGAAGTTCCTTTTGGTCAGAGAACATCAATGAATGGAAATGGCTCTTTTAACCAGTCTCAAGCATCATGGGGCGTTTTAGATGGTCAAGGTGTGAAAGGTCAACATACTAAGGTTGTAGAAGGGAGCTCAAAAATGGGCATTGGAATTGATAGGCAATTGAGTTTTCATAAGCAGCTTTCAGGACAGTCAAGACGCCATGATGGTGTTAGATCTCCTTCACAGAGTGTTGGGTCTCATGATATTGGGTCAAATTATAGTTTTGAGAAAAAGAGGGAGGTTAGGGACCGGAGTAGTGGTGGTCTGTATCGAACTACCAGCCAGAAAGAACAAGAACAACTTTTGATGGGTGGAATTGATTTTGTTGAGATCATTGCAAGAATAGTTTCTGAACCTGTGCCTGCAATGTCCAGAAAGTTTCATGAAATGAATGGACAGTCCATAGCATATCTGAAAGAGGGCATTCGTGAAATGATGCTCAATGCAGATAAGCATGGACAGGTCATTGCTTTTCAGAAAGTTCTGCAGAACAGGTCAGATATAAACATGGATGTCCTACTGAAGTGCCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAACTCATTTTCTTCACCTAGATGACAGCATTTCATCTTCTGATTTAGCTCAAGTGTTTCTGAACTTGAGATGTAGGAATCTTTCATGTCCAAGTCTACTGCCTGTGGATGAATGTGATTGCAAGGTTTGTGCACCGAAGAATGGATTTTGCAGGGACTGTATGTGTCTTGTGTGTTCCAAGTTTGACAATGCGTCAAATTCATGTAGTTGGGTTGGGTGTGATGTTTGCCTTCATTGGTGCCATACTGATTGTGGATTACGGGAATCTTATATTAGAAATGGGCATAGTACTACTGGGACAAAAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGAATGGTCAGTTGAAACTCTTTGCAAGGAGCTTGAATACGTGAAGAGAATTTTTTCTCCCAGCAAGGATATGAGAGGGAGACAGTTGCATGAGATTGCAGATCAAATGCTGCCAAGGTTGGCGATTAAGTCTAACCTTCCCGAGGTTTTGAGGCTCATCATGTCTTTCCTTTCTGATAGTGATTCTTCGAAATTAGCCATGGCAACAAACTTTTCTGGGAAGGAACAAGTTAAAGAAAACAAGGGGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTGAAATCTATTTATTCAGAAAAGCCACCTCTTTTAGAAAGGCCTGCAAACATCCTTCCTAGCTTTGACCAGAATGATAAAAGGACTTTGGCACAAGAGTTGCAGATGAGTAGTGTTCAAAAGGACTTCTGTTTTGATGAATTGGAGAGCATAGTAAAAATCAAACAGGCAGAGGCTAAAATGTTCCAATCTCGGGCTGATGATGCTAGAAGAGATGCAGAAGGGTTGAAACGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGCCAATCGAATTGCCAAGTTGCGATTGGCTGAGACTGATGAAATGCGTAAACAAAAATTTGAAGAACTCCAAGCATTAGAGAGGGCGCATCTGGAGTATTTGAACATGAAAATGAGAATGGAGGCAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAGATGAGCCTTGCCATGTGA 3594 0.4382 MKRLRSSEDLHSYGDKNAGKDSNVNRSFSTSAQRSFYYKPDNVRKGLLSSSSSRYERDRTVDEDREGSRLVRKRSEHDFEGFDRRKGFDRYRDSGYVGGGGDRGLIHRSESFCGSRRDFPKGFRSERDRSRREGSVSSWRRGLKDFDESGRGGRVVGGVEERVVRSPKGLRDVKSPTWSRDVKSPTWSRDSESEQSKKRSSSPRGLRDAKSKSKSPTWSKDSESEQSKSVEVKKTEEVQVQSGSSSSEMEEGELEPEPVPQTGAATEPQVAQKDDAPGSEDQPSVPPLETDDRQVQNECQPNDTDTAMEERQELTSKEEAKPYEDIDSEVKDAEEEADDRMPDVEDDSTKKMLVTETELDTMGSDDDIKDVGLNGDTQCKEETEKGVDLFNEEEHKQEKGVDLETSTDVDKPEVNDEVSTENEVPKEENREMMMESVTNNVKDKGKSISVTPNEVAQPSEDGLWIDRGPRDLTTYSADVMEGPSTRGFELFSRSPVRKVEKPDHSVLNKQKDDGLAMEQLDLTLSLPNVLLPIGAHETTTQVPGSPSQARSVQSLTNTFCTNSDGFTASMSFSGSQSFHHNPSCSLTKNSVDYEQSVGSRPLFQGFDWQGQSQSDPKQKEVPFGQRTSMNGNGSFNQSQASWGVLDGQGVKGQHTKVVEGSSKMGIGIDRQLSFHKQLSGQSRRHDGVRSPSQSVGSHDIGSNYSFEKKREVRDRSSGGLYRTTSQKEQEQLLMGGIDFVEIIARIVSEPVPAMSRKFHEMNGQSIAYLKEGIREMMLNADKHGQVIAFQKVLQNRSDINMDVLLKCHRVQLEILVALKTGLTHFLHLDDSISSSDLAQVFLNLRCRNLSCPSLLPVDECDCKVCAPKNGFCRDCMCLVCSKFDNASNSCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSVETLCKELEYVKRIFSPSKDMRGRQLHEIADQMLPRLAIKSNLPEVLRLIMSFLSDSDSSKLAMATNFSGKEQVKENKGVAGPSQEAAWLKSIYSEKPPLLERPANILPSFDQNDKRTLAQELQMSSVQKDFCFDELESIVKIKQAEAKMFQSRADDARRDAEGLKRIALAKNEKIEEEYANRIAKLRLAETDEMRKQKFEELQALERAHLEYLNMKMRMEADIKDLLSKMEATKMSLAM* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00124 1197 MobiDBLite consensus disorder prediction 1 468 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 109 155 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 604 640 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 185 235 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 304 328 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 677 725 - -
Rops3g00124 1197 Pfam Coiled-coil region of Oberon 1070 1185 IPR032535 -
Rops3g00124 1197 Pfam PHD - plant homeodomain finger protein 846 969 IPR032881 -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 18 37 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 605 640 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 289 303 - -
Rops3g00124 1197 Coils Coil 1146 1166 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 703 717 - -
Rops3g00124 1197 CDD PHD_OBE1_like 876 935 IPR047578 -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 164 178 - -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 883 903 IPR004082 -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1092 1112 IPR004082 -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 757 779 IPR004082 -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 837 858 IPR004082 -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1131 1153 IPR004082 -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 811 826 IPR004082 -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 956 975 IPR004082 -
Rops3g00124 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 796 811 IPR004082 -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 362 433 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 434 456 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 1 16 - -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 51 92 - -
Rops3g00124 1197 Coils Coil 1116 1136 - -
Rops3g00124 1197 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1194 IPR004082 -
Rops3g00124 1197 MobiDBLite consensus disorder prediction 677 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00124 Rops-Chr3 1715476 1720483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00124 846 994 PHD Gene Family AT5G57380 26.846 7.12e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00124 - - gmx:100817003 1721.83