Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00123 ATGGAGGAAGTTCAAGAGCCTCAAACCCAACCATCACTCGGTCAAGAAGATGGAGATGAAGTGATTACTGAAAGTTCTGCATTTGTTAAAGGGGAACCACCACAAGAATGGAGTATCCCCCCAAAAGTTGATTCTGAAGTTGAGGTCCTTCATGAAAAGGTCACCAAACAAATAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTCCATTACAGGGCGTGGTCTGAGAGCACGCAGCACAAGTTCGAAGACACATGGCAGGAGCAGGGACCAATTGAGATGGTATTAGGAAAAGAGAAGAAAGAAATGACTGGCTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGGGCATTGCTGCGTGTGGGCTGGGAATTAGGATATGGAAAGGAAGGAAGCTTTTCATTTCCAAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAAAGGATTGGTACAGCAGATCGGAGAAAGATGGATGGAAATGCTTTGTTTCAGGAAAATAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAACCTATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGGGATATGGCTCTGGCTGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTCTAATTAAGCTGAACCGCTATGAAGAAGCTATAGGACAGTGTAGCATTGTATTGGGTGAGGATGAGAACAATGTCAAGGCATTGTTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATTTTCTAAAAGCACGAAAGTATGCCCCTGAAGATAAAGCAATTGCAAAAGAATTGAGGTTGCTTGCTGAACATGACAAGGCTACTTACCAAAAGCAGAAAGAGATTTATAAAGGAATATTTGGAGCAAGGCCTCAACCAGTACCTAGGAGAATGAATTGGCTGATACTCATTTGGCAGTGGTGGCTTTCACTATTTCATGGCCTTATCACATTATTCAAGCGTGAAAGGCACAAATCTGACTAA 1110 0.4342 MEEVQEPQTQPSLGQEDGDEVITESSAFVKGEPPQEWSIPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSESTQHKFEDTWQEQGPIEMVLGKEKKEMTGLGIGVASMKAGERALLRVGWELGYGKEGSFSFPNVPPMADLVYEVELIGFDETKEGKARSDMTVEERIGTADRRKMDGNALFQENKLEEAMQQYEMAITYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDAAREDFLKARKYAPEDKAIAKELRLLAEHDKATYQKQKEIYKGIFGARPQPVPRRMNWLILIWQWWLSLFHGLITLFKRERHKSD* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00123 369 Gene3D - 38 163 IPR046357 GO:0003755
Rops3g00123 369 Pfam Tetratricopeptide repeat 268 299 IPR019734 GO:0005515
Rops3g00123 369 SUPERFAMILY FKBP-like 30 168 - -
Rops3g00123 369 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 70 162 IPR001179 GO:0003755
Rops3g00123 369 MobiDBLite consensus disorder prediction 1 41 - -
Rops3g00123 369 SMART tpr_5 267 300 IPR019734 GO:0005515
Rops3g00123 369 SMART tpr_5 233 266 IPR019734 GO:0005515
Rops3g00123 369 SMART tpr_5 182 215 IPR019734 GO:0005515
Rops3g00123 369 SUPERFAMILY TPR-like 174 323 IPR011990 GO:0005515
Rops3g00123 369 ProSiteProfiles TPR repeat profile. 267 300 IPR019734 GO:0005515
Rops3g00123 369 MobiDBLite consensus disorder prediction 1 16 - -
Rops3g00123 369 FunFam Peptidylprolyl isomerase 167 295 - -
Rops3g00123 369 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 97 339 IPR039663 -
Rops3g00123 369 Gene3D Tetratricopeptide repeat domain 164 295 IPR011990 GO:0005515
Rops3g00123 369 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 66 159 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00123 Rops-Chr3 1699871 1703709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00123 47 335 Calmodulin-binding Proteins AT5G48570 32.095 3.21e-30 119