Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00114 ATGGAAGCTGCGGTGGTGGACGTCGGTTCAAAGCTCCTGAAAGCTGGTTTTGCTATTCCTGATCAGACTCCCGCCATGATAATTCCAACTCAGATGAAGCGCTTGCTTGACGATGGCTCTGTGACTGATGATTCACATGTTGATAATGCCACCGTTGTTGACCCAGTTGTGCGAGGATTCATCAGAGATTGGGATGCCATCGAGGATTTGTTACACCACGTTTTATATACTGGCCTTGGTTGGGAAATTGGCAATGAAGGACAAATACTGTTTACTGATCCACTCTGCACCCCAAAGGCCAACAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCTGGGTTTTATGCCTCAGAACAAGCAGTGTTATCACTGTATGCTGTCGGACGTATCTCTGGGTGCACTGTTGATATAGGACATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTGTTGATTTAACTAATTTTCTGGCTCAAGAACTTGGCAAATCCAATCCACTAGTAAACATCAGCATGTCTGATGTGGAGAAAATAAAAGAGCAATACTCATGCTGTGCTGAAGATGAATTAGCTTATAAGAAGACACAACATTCTTGTCCTGTGGAGAAACATACCCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAGAGATATACTGTTGGTGAAGCTTTATTCCAGCCAAGTCTTTTGGGTTTAGAGGCTCATGGCATTGTTGAGCAGCTTGTCCGTACTATTTCAACTGTGTCATCTGATAATCATCGGCAGCTGCTGGAAAACACTGTGGTTTGTGGTGGCACTTCTTCTATGACCAGTTTTGAAGAGAGATTTCAGAAGGAATCTAGCTTAAGTTCATCAGTGGTTCAACCTACCCTGGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCCGCATGGGTGGGAGGTGCCATCCTTGCCAAAGTAGTTTTCCCTCAAAATCAACATATAACCAAGGCAGACTATGATGAAACCGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1089 0.4307 MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTQMKRLLDDGSVTDDSHVDNATVVDPVVRGFIRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGVDLTNFLAQELGKSNPLVNISMSDVEKIKEQYSCCAEDELAYKKTQHSCPVEKHTLPDGQVITIGRERYTVGEALFQPSLLGLEAHGIVEQLVRTISTVSSDNHRQLLENTVVCGGTSSMTSFEERFQKESSLSSSVVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00114 362 FunFam Actin-related protein 7 4 128 - -
Rops3g00114 362 SUPERFAMILY Actin-like ATPase domain 132 362 IPR043129 -
Rops3g00114 362 PRINTS Actin signature 101 114 IPR004000 -
Rops3g00114 362 PRINTS Actin signature 126 145 IPR004000 -
Rops3g00114 362 PRINTS Actin signature 46 68 IPR004000 -
Rops3g00114 362 PRINTS Actin signature 218 234 IPR004000 -
Rops3g00114 362 SMART actin_3 1 362 IPR004000 -
Rops3g00114 362 PANTHER ACTIN 4 355 IPR004000 -
Rops3g00114 362 CDD NBD_sugar-kinase_HSP70_actin 4 167 - -
Rops3g00114 362 Gene3D Actin; Chain A, domain 4 166 253 - -
Rops3g00114 362 Pfam Actin 2 362 IPR004000 -
Rops3g00114 362 Gene3D - 5 356 - -
Rops3g00114 362 SUPERFAMILY Actin-like ATPase domain 2 139 IPR043129 -
Rops3g00114 362 Gene3D - 124 325 - -
Rops3g00114 362 FunFam Actin-related protein 7 166 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00114 Rops-Chr3 1588360 1594940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00114 1 362 Cytoskeleton Gene Families AT1G49240 37.995 2.11e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00114 K16615 - gmx:100813266 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00114 3 1588360 1594940 Rops3g00114 3 1588360 1594940 ECH