Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00108 ATGGCTGGGAATTCGGTGAGTGGCAACATTCCCGGTGATATCTTTCACTTGGACCAACTACACGAGCTTGACTTATCCTCCAACCAAATATCAGGAGAGATTCCACCCCACATAGGAAATTCTTCAAACTTGTATCTTTTAAATTTGGCAGGCAACAAACTTTCCGGTATGATACCAGCAGCAATTGGAAAGCTCTCTAATTTACAGTCTTTAGACCTGTCAATGAACATGCTGTTGGGACCAATCCCAAATCAGATAGGGGACTGCTCCAACTTGCAGAATTTAAATTTGAGCAACAATGACTTGAGTGGTACAATCCCCTACGGAATTGGAAATCTTGCTGCCATCCAGTATTTTTTGGACTTGAGTTACAATTCACTTTCAGGAAAAATTCCTTCTGATCTTGGTAAGCTTTCAAATTTGATAAGCTTGAATGTCTCTCACAACAATCTGTCAGGTTCTATCCCTCATTCCATTAGTGAAATGTTTAGCTTGTCAGCCATCAACCTCTCCTACAATTACTTGGAGGGCCCTGTTCCTGAAGGTGGCATATTCAACTCTTCTCATCCGATGGATTTGAGCAACAACAAAGATTTATGTGGGAATATCCAAGGTTTGCAACCTTGTAATGTCTCTCTCTCTGAACCTGATGGTGGAAGTAACAAACACAAGGTTGTTGTAGCCATTTTTTCTTCTTTGGGAGGTGTTCTCCTTCTTTCATTGGTGTTAGTTGGGATATTTTCCTTCTTCTGTAAGAGAGAGTCAAGAGCCTCAAGACAAAAATCTTCATTGAAGAGATCAAATCCATTTTCAATTTGGTACTTTGATGGCAGAGTTGTGTATGATGACATAATTGAAGCTACGAAGAACTTTGACAACCAGTATTGCATTGGGGAAGGGGCACTTGGAAAAGTTTATAAAGTAGAGATGCCAGGAGGTCAAGTACTTGCTGTAAAAAAGTTGAAATATGATGCAGACGACTTAGACACTGAGAGTATAAAATCCTTTCAGAATGAGGTAGAAGCCATGACAGAAACACGCCACAGAAACATTGTGAAGCTCTACGGATTTTGTTCTAAAAGGATGCACACATTTCTTATTTACGAGTATATGGAAAGAGGGAGCTTAGCTGATATGCTGACAAATGACAAGGAAGCATTAGAACTAGATTGGCATAAGAGGATTGTTATCATCAAAGGTGTAGCAAGTGCACTGTCCTACATGCATCATGATTGTGCTTCACCTTTAATTCATAGAGACATATCAAGCAATAATGTTTTATTATCTTCCAATCTTGAAGCTCATGTCTCAGACTTCGGCACTGCAAGGTTTTTGAAGCCTGATTCGCCTATTTGGACATCATTTGCCGGCACATATGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTAACTGAGAAATGTGATGTGTTCAGTTTTGGTGTTTTGATATTGGAGATTCTTAAGGGAAAGCACCCTGGTGATCTTGTTTCCTACATACAAACCTCTAGCGATCAAAAGATAGACTTCAAAGAGATTTTAGACCCGCGCCTCCCACCTCCTACAAAGGACAATATTTTGAAGCAATTGGCATTGATTGCGAACTTAGCTCTTTCTTGTTTACAAACAAACCCTCAATCTCGACCAACCATGCGAAGCATAGCTCAGCTGCTTGAAATGGAGATTGCAGTAAACCCGTGA 1704 0.4043 MAGNSVSGNIPGDIFHLDQLHELDLSSNQISGEIPPHIGNSSNLYLLNLAGNKLSGMIPAAIGKLSNLQSLDLSMNMLLGPIPNQIGDCSNLQNLNLSNNDLSGTIPYGIGNLAAIQYFLDLSYNSLSGKIPSDLGKLSNLISLNVSHNNLSGSIPHSISEMFSLSAINLSYNYLEGPVPEGGIFNSSHPMDLSNNKDLCGNIQGLQPCNVSLSEPDGGSNKHKVVVAIFSSLGGVLLLSLVLVGIFSFFCKRESRASRQKSSLKRSNPFSIWYFDGRVVYDDIIEATKNFDNQYCIGEGALGKVYKVEMPGGQVLAVKKLKYDADDLDTESIKSFQNEVEAMTETRHRNIVKLYGFCSKRMHTFLIYEYMERGSLADMLTNDKEALELDWHKRIVIIKGVASALSYMHHDCASPLIHRDISSNNVLLSSNLEAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLILEILKGKHPGDLVSYIQTSSDQKIDFKEILDPRLPPPTKDNILKQLALIANLALSCLQTNPQSRPTMRSIAQLLEMEIAVNP* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00108 567 FunFam MDIS1-interacting receptor like kinase 2 371 565 - -
Rops3g00108 567 Gene3D Ribonuclease Inhibitor 1 215 IPR032675 -
Rops3g00108 567 PANTHER LEUCINE RICH REPEAT KINASE 2 7 561 - -
Rops3g00108 567 ProSiteProfiles Protein kinase domain profile. 291 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00108 567 Pfam Leucine rich repeat 42 102 IPR001611 GO:0005515
Rops3g00108 567 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 83 209 - -
Rops3g00108 567 Gene3D Phosphorylase Kinase; domain 1 252 370 - -
Rops3g00108 567 PRINTS Leucine-rich repeat signature 20 33 - -
Rops3g00108 567 PRINTS Leucine-rich repeat signature 65 78 - -
Rops3g00108 567 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 82 - -
Rops3g00108 567 SUPERFAMILY Protein kinase-like (PK-like) 265 560 IPR011009 -
Rops3g00108 567 ProSitePatterns Tyrosine protein kinases specific active-site signature. 416 428 IPR008266 GO:0004672|GO:0006468
Rops3g00108 567 SMART LRR_typ_2 65 89 IPR003591 -
Rops3g00108 567 SMART LRR_typ_2 138 162 IPR003591 -
Rops3g00108 567 SMART LRR_typ_2 17 41 IPR003591 -
Rops3g00108 567 FunFam Leucine-rich repeat receptor protein kinase MSP1 253 370 - -
Rops3g00108 567 Gene3D Transferase(Phosphotransferase) domain 1 371 565 - -
Rops3g00108 567 Pfam Protein kinase domain 296 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00108 567 Pfam Leucine Rich Repeat 140 160 IPR001611 GO:0005515
Rops3g00108 567 Pfam Leucine Rich Repeat 20 40 IPR001611 GO:0005515
Rops3g00108 567 SUPERFAMILY L domain-like 2 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00108 Rops-Chr3 1446869 1450463 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00108 1 464 Receptor kinase-like Gene Family AT4G08850 47.548 4.21e-140 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops3g00108 Pkinase 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00108 - - gmx:100814345 900.968