Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00107 ATGTGGCAGCACCAACTTTGGCGCCTCACACTAGGCCCATTTCTCGTTGGCGCCTCACATGGACTTGTGTTCCATTTGGCCACCGACGACGTTTTCAACCAGGACACCCTCCAGCAATGGCTTCAGGCACTCGTCGAAGGTGCTAGAGAGAGCTGGACCTATGCAATTTTTTGGCAACCCTCACATGACTATTCTGACGCCTCCCTCCTCAGTTGGGGCGACGGTTACTACAAACGCGACGAAGACGAAGCTAAAGACAAATCCACCTCCTCCGTCGCCGAACAAGACCACCAAAAAAAGGTCGTCAGTGAGCTCAATTCCCTCATGTTCAGTTCCTCCACCCCAGACCCAGAAGACACTATTGATGAAGTCACCGACACCGAGTGGTTCTTCCTCGTTTCCTTGACCCAATCATTCGTCAACAACGGTGGGTTGCCGAGTCAAGCATACTTCAGTACCATCCCCATTTGGGTCGTCAACGCCGACCATCTCTTCGCCTTGTCATGCGAGAAGGAAAGGCAGGGACAAACTTTTTGGCCTTCAAACCATGGTGTGTGTTCCGTCTGCCAATGTCCTTGTGTGAGGCGCCAAAGTGAAATGGCCCTTGTGTGA 612 0.5245 MWQHQLWRLTLGPFLVGASHGLVFHLATDDVFNQDTLQQWLQALVEGARESWTYAIFWQPSHDYSDASLLSWGDGYYKRDEDEAKDKSTSSVAEQDHQKKVVSELNSLMFSSSTPDPEDTIDEVTDTEWFFLVSLTQSFVNNGGLPSQAYFSTIPIWVVNADHLFALSCEKERQGQTFWPSNHGVCSVCQCPCVRRQSEMALV* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00107 203 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 37 176 IPR025610 -
Rops3g00107 203 PANTHER MYC 31 191 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00107 Rops-Chr3 1442603 1443214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00107 32 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 47.802 2.60e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00107 K13422 - qsu:111985629 208.379