Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00106 ATGATGAACCATAACCATGCATGTTGTGCCGGTGTTACTATTCCAGTTACATTGGTGGTTTTGCTGGCTTTATGTCATGGCACTTCAGCGCTAACACAAGCTAAGGCCCTTCTCGAGTGGAAGAAAAGTCTCCCTGACCAACCAATCTTGGATTCATGGGTCACCAACTCAAGTGCATGTTCATGGCGAGGTATCACTTGTGATTCTCAAGGCAGCGTCACTATAATAAATTTGGCTTACACTGGACTTGAAGGTACCCTCAAAAACTTGAACTTGTCTGTTTTCCCAAACCTCCTTCGTCTTGATCTCAAAGAAAACGAACTCAGAGGCACCATACCAGAAAATATTGGGGTGCTTTCAAAACTCCAATTCCTTGATCTTTCCTCTAATTATCTCAATGGCACTTTACCTCTTTCTATGGCCAATCTGACTCAAGTTTATGAACTTGATGTTTCAAGAAATGATATAACAGGGTACTTAGACCCTCGCTTATTTCCTGATGGAACTCATCAGCCCAAAACTGGTCTCACTGGGATAAGGAATCTCCTCTTCCAGGAGACCCTGCTAGGTGGCAGGATTCCAAACGAATTAGGGAACATTAGAAACTTGACTCTGCTAGCTCTAGATAAAAACAACTTCTATGGGCCTATTCCTCCATCTCTAGGCAACTGCACACATTTGAGCATTCTTCGAATGCCTCTCAACCATCTCTCAGGTCCAATACCTCCAAGTATTGGTAAGTTAACGAATCTAACTGATGTGCGCTTTTTCTCCAACAACTTAAATGGTACTGTGCCACAAGAGTTTGGAAACCTGTCTTCTTTGATTGTGCTACATCTTGCTGAGAACAACTTCATCGGTGAATTACCACCACAAGTGTGCAAAAGTGGAACGCTTGTCAATTTCAGTGCAGCCTTCAATAATTTCACTGGCCCAATTCCAGTAAGCCTAAAAAATTGCCCCGCCTTATACAGAGTTCGACTCGAATACAACCAGCTGACAGGTTATGCAGATCAAGATTTTGGAGTATATCCTAACCTTACTTACATGGACTTCAGCTATAATAGGGTGGAAGGTGAGCTCTCTGAAAATTGGAGTGCCTGCAAAAACTTGCAATCACTCAGAATGGCTGGGAATTCAGTGAGTGGCAACATTCCAGGTCATATTTTTAACTTGGACCAACTGCAAGAGCTTGACCTATCCTCCAACCAAATATCAGGAGAGATTCCTCCACAGATAGGAAATTCCTCAAACTTGTATCTTTTAAATTTGGGTGGCAACAAACTTTCTAGTATGGTACCAGTAGAAATTGGAAAACTTTCTAATTTACAGTCTTTAGACCTGGCAATGAACATGCTGTTGGGACCAATCCCAAATCAGATAGGGGACTGCTCCAACTTGCAGAATTTAAATTTGAGCAACAATGACTTGAGTGGTACAATCCCCTACGAAATTGGAAATCTCGCAGCCATACAATATTTTTTGGACTTGAGTTACAATTCACTTTCAGGAAAAATTCCTACTGATCTTGGTAAGCTTGTGGATTTGATAAGCTTGAATATCTCTCACAACAATCTGTCAGGTTCTATCCCTCATTCCCTTGGTGAAATGTTGAGCTTGTCAGCCATCAACCTCTCTTACAATAACTTGGAGGGCCCTGTTCCTGAAGGAGGCATATTCAACTCTTCTCATCAGCTGGATTTGAGCAACAACAAAGATTTATGTGGGAATATCCGAGGTTTGCAACCTTGTAATGTCTCTCTCACTGAACCTGATGGTGGAAGTAACAAACACAAGGTTGTAACCCCCATTTTTGCTTCTTTGGGAGGTGCTCTTTTTCTTTCATTGGTGTTTGTAGGGATATTTTCCTTCTGCTGTAAGAGAGAGTCAAGAGCTTTAAGACAAAAATCTTCATTGAAGAGATCAAATCCATTTTCAATTTGGTACTTTGATGGCAGAGTTGTGTATGATGACATAATTCAAGCTACCAAGAACTTTGACAACCAGTATTGCATTGGGGAAGGGGCACTTGCAAAAGTTTATAAAGTGGAGATGACAGGAGGTCTAGTCCTTGCTGTAAAAAAGTTGAAATGTGATGCAGACAACTTAGACACCGAGAGTATAAAAGCTTTTCAGAATGAGGTAGAAGCTATGACAGAAACACGCCATCGAAACATTGTGAAGCTTTACGGATTTTGTTCTAAAGGGATGCACACATTTCTGATTTACAAGTATATGGATAGAGGGAGCTTAGCTGATATGCTGACAAATGACAAGGAAGCATTAGAACTAGATTGGCATAAGAGGGTTGATATTATCAAAGGTGTAGCAAACGCTTTGTCCTACATGCATCACGATTGTGCCCCACCTTTAATTCATAGAGACATATCAAGCAAGAATGTTTTATTATCCTCCGATCTTCAAGCTCGTGTCTCAGATTTCGGCACTGCAAGGTTTCTGAAGCCTAATTCGCCTATTTGGACATCATTTGCCGGCACATATGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTAACTGAGAAATGTGATGTGTTCAGTTTTGGTGTTTTGGCATTTGAGATTCTTACGGGAAAGCACCCTGCTGATCTTGTTTCCTACATACAAACCTCTAGCGATCAAAAGATAGACTTCAAAGAGATTTTAGACCCGCGCCTCCCACCTCCTACAAAGGACAATATTTTGAAGCAATTGGCAATGATTGCGAACTTAGCTCTTTCTTGTTTACAAACAAACCCTCAATCTCGACCAACCATGCGAAGCATAGCTCAGCTGCTTGAAATGGAGATTGCAGTAAACCCGTGA 2829 0.4143 MMNHNHACCAGVTIPVTLVVLLALCHGTSALTQAKALLEWKKSLPDQPILDSWVTNSSACSWRGITCDSQGSVTIINLAYTGLEGTLKNLNLSVFPNLLRLDLKENELRGTIPENIGVLSKLQFLDLSSNYLNGTLPLSMANLTQVYELDVSRNDITGYLDPRLFPDGTHQPKTGLTGIRNLLFQETLLGGRIPNELGNIRNLTLLALDKNNFYGPIPPSLGNCTHLSILRMPLNHLSGPIPPSIGKLTNLTDVRFFSNNLNGTVPQEFGNLSSLIVLHLAENNFIGELPPQVCKSGTLVNFSAAFNNFTGPIPVSLKNCPALYRVRLEYNQLTGYADQDFGVYPNLTYMDFSYNRVEGELSENWSACKNLQSLRMAGNSVSGNIPGHIFNLDQLQELDLSSNQISGEIPPQIGNSSNLYLLNLGGNKLSSMVPVEIGKLSNLQSLDLAMNMLLGPIPNQIGDCSNLQNLNLSNNDLSGTIPYEIGNLAAIQYFLDLSYNSLSGKIPTDLGKLVDLISLNISHNNLSGSIPHSLGEMLSLSAINLSYNNLEGPVPEGGIFNSSHQLDLSNNKDLCGNIRGLQPCNVSLTEPDGGSNKHKVVTPIFASLGGALFLSLVFVGIFSFCCKRESRALRQKSSLKRSNPFSIWYFDGRVVYDDIIQATKNFDNQYCIGEGALAKVYKVEMTGGLVLAVKKLKCDADNLDTESIKAFQNEVEAMTETRHRNIVKLYGFCSKGMHTFLIYKYMDRGSLADMLTNDKEALELDWHKRVDIIKGVANALSYMHHDCAPPLIHRDISSKNVLLSSDLQARVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPADLVSYIQTSSDQKIDFKEILDPRLPPPTKDNILKQLAMIANLALSCLQTNPQSRPTMRSIAQLLEMEIAVNP* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00106 942 ProSitePatterns Tyrosine protein kinases specific active-site signature. 791 803 IPR008266 GO:0004672|GO:0006468
Rops3g00106 942 Gene3D Transferase(Phosphotransferase) domain 1 746 940 - -
Rops3g00106 942 FunFam MDIS1-interacting receptor like kinase 2 746 940 - -
Rops3g00106 942 SMART LRR_typ_2 392 416 IPR003591 -
Rops3g00106 942 SMART LRR_typ_2 440 464 IPR003591 -
Rops3g00106 942 SMART LRR_typ_2 272 296 IPR003591 -
Rops3g00106 942 SMART LRR_typ_2 143 167 IPR003591 -
Rops3g00106 942 SMART LRR_typ_2 513 537 IPR003591 -
Rops3g00106 942 SMART LRR_typ_2 95 119 IPR003591 -
Rops3g00106 942 SUPERFAMILY Protein kinase-like (PK-like) 640 935 IPR011009 -
Rops3g00106 942 PRINTS Leucine-rich repeat signature 392 405 - -
Rops3g00106 942 PRINTS Leucine-rich repeat signature 122 135 - -
Rops3g00106 942 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Rops3g00106 942 FunFam Leucine-rich repeat receptor-like protein kinase TDR 269 586 - -
Rops3g00106 942 SUPERFAMILY RNI-like 307 561 - -
Rops3g00106 942 Gene3D Phosphorylase Kinase; domain 1 625 745 - -
Rops3g00106 942 Pfam Protein kinase domain 671 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00106 942 FunFam Leucine-rich repeat receptor protein kinase MSP1 628 745 - -
Rops3g00106 942 ProSiteProfiles Leucine-rich repeat profile. 394 416 IPR001611 GO:0005515
Rops3g00106 942 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 173 265 - -
Rops3g00106 942 PANTHER LEUCINE RICH REPEAT KINASE 2 182 936 - -
Rops3g00106 942 FunFam Nuclear pore complex protein NUP107 30 165 - -
Rops3g00106 942 Pfam Leucine rich repeat 394 453 IPR001611 GO:0005515
Rops3g00106 942 Gene3D Ribonuclease Inhibitor 105 169 IPR032675 -
Rops3g00106 942 Gene3D Ribonuclease Inhibitor 256 587 IPR032675 -
Rops3g00106 942 Gene3D Ribonuclease Inhibitor 28 104 IPR032675 -
Rops3g00106 942 SUPERFAMILY L domain-like 57 382 - -
Rops3g00106 942 ProSiteProfiles Protein kinase domain profile. 666 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00106 942 Gene3D Ribonuclease Inhibitor 170 255 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00106 Rops-Chr3 1395584 1398858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00106 20 839 Receptor kinase-like Gene Family AT4G08850 39.130 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops3g00106 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00106 - - aprc:113866080 1550.03