Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00099 ATGAAGCGGGCACGCACGGATGATTCTAGTTCTTCTAGGGTTTCACCTTCTCTTCAGGCTGGCATCATCAAGAGACTTCGATTGGAGAATTTCATGTGTCATTCCAACCATGAGACCGAGTTCGGAAACCACCTCAATTTCATCACTGGCCAAAATGGAAGTGGTAAGAGTGCAATCCTAACTGCATTGTGTGTTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGGGCATCCACTCTGAAGGATTTCATTAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAGCCTGAAGTATATGGTGATGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGCTCCATTACATTAAAAGATCACCAAGGAAAGAAAGTTTTCAGTCGGAAAGTAGATCTTCAAGAAATCATTGAGCATTTTAATATTGACGTGGAGAATCCATGTGTGATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGAAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACGCTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCAATGAAATAAATAAAGCTCATGGAATAGTTGAAGAATTAGAGATTGCAATAAGGCCCATAGAGAAAGAGCTTAATGAGCTGCAGATTAAAATTAAAAATATGGAACATGTTGAACAAATATCCATGCAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCCTGGGTTTATGATGTGGACAAGCAACTTGAGGAACAGAATGTAAGGATTGAAAAGCTGAAGAACCGAATACCCACCTGCCAAGCTAAGATTGATCAACAACTGCATCGGGTTGAAAAATTGAAGGAAAGCTGCACTAAGAAGAAAGTCGAAATTGCAAGTATGTTGGAAACAACATCACAAGTTAAGCAAATGAAGGAAAATTTAAGCCACTCTGTGTCGTTGGCAACAAAAGAAGCACTTGAACTCGAGCAAGATTGCAAATGCAAAATTAGCAACATACAAAAGATGGTACAACAACTCAAAATGCTTGAACAACAAATGCAGGATATTCACGAGCAGCATGTAAAAAATACTCAGGCTGAAGAATCTGACATGGAGGAGAAACTGAAGGGGCTTCGAGACGAGGTACATGCTGCTGAATTAGATCTGAAAAGTTTGAAAGAAGAGGAGGCTATGTTAATGAACAGCATAAGTAGGCAAAATGATGAAATCAGAAAGATTGCTGATAAGATCCTAGATCATGAAAAAAGGTATCATGTTATCATGCGTAACATTCGTGATCTTCAACAACAACAAAGCAACAAGATTACAGGTTTTGGAGGAGATAAAGTGATGCATCTGTTACGTATAATTGAGAGATATCATCAAAGGTTTAAGATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTTGCTGTTGAATATGCTATTGGGAGATTGCTCAATTCTTTCATAGTGACTGATCACAAGGATTTTCATCTTCTGAAACAATGTGCAAAAGAAGCAAACTATGGTCACCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGTTGACGATACCACAGCACATGCTTCCTGATACAAAACATCCAACAACTCTTTCCATTTTACAATGCGAGAATCACACCGTGATTAATGTCTTAGTGGATCTGGGAAATGTTGAGAGACAAGTGCTCGTTAACGATTATGATATTGGGAAAGTAGTTGCCTTTGAACAAAGAATCCGAAATCTGAAGGAGGTCTATACGCTGGAGGGATGTAGAATGTTTTCTCGAGGTTCAGTACAGACTATTCTTCCTCCAAGCAGGAGGCAAAGAACTGGCCGTCTAAGTAGTTCAGTTGAAGATGTGATTGAGAAACTTCATAATGAAGCATCTGATGAACAGAAAGCAGCTAATGACTGTAAAAGGAATAAAAGAGAGGCAGAGATCAAGCTTGAGGAGCTTGACAGGAATTTTAATTCTATGAAGAGGCTTTGTGTAAATGCTGGAAAAAGTTTTACTTCTAAGAAGCTAGCTTTGGAGGAGGCAATGCATCAGCGTGCTGCTGAAATTAGCTCAACACCTTTGTCCTCAGTCGATGAGATTATTGAAGCAATTTCAGAAATCCAGAAAAAAATAAAAGAAGAGCAAGTCTTGTTGGATGTCCTTGAGCAGAGGAGGCATGAAGCAGCAGGAAAAGCAAAAGATCTTAAAGTAAAATTTGACAAACTGTGTGAATCAGCGAACGGGGAAATTGCTGCCCTTGAGAAAGCTGAGAGTGAACTTATGGAGATTGAAAGAGAAATGAATTCGGCAAAAGAGGCAAAGGATCATTATGATGGTGTCATGAAAAACAAGGTCCTACGTGATATCAAGGAGGCAGAGGAACACTATATGGAGCTTACAAAGAGGCGCGAGGTGAATGTTGAAAAGGCTTCCATAATTTGCTGTCAGAAAGAACTTGATTCGTTAAGAGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCCCAATTAGAAAGACTAAATCAGACACTTAGGCGTGAGAGCCAAAGATACTCCGAATCAATTGATGATCTTAGGATGCTGTATGCGAAAAAAGAACGTAAGATTATAAAAAGGCAGCAAGTTTACAAAGCCCTTCGACAAAAATTGGATGCTTGCCAAAGAGCCTTACAGTTACGAAGTAGCAAGTTTCAGAGAAATGCGACTTATCTGAAGCACCAACTTTCTTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATCAGTGGAGTTATTAGAGTTAATTACGAGGAGAAAACCTTATTGATTGAGGTACAGATGCCCCAAGACGCATCAAACAAAGCTGTTCGGGACACTAGGGGGCTTTCAGGTGGTGAGCGTTCTTTTTCAACATTGTGCTTTGCATTAGCTCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTGGTTGATTTTGCTGAGGCACAAGGATCCCAGTGGATATTCATCACCCCGCATGATACCAGCTCGGTGAAGGCTGGGGACAGGATAAAGAAGATGCAAATGGCAGCTCCGCGTTCTTGA 3180 0.3978 MKRARTDDSSSSRVSPSLQAGIIKRLRLENFMCHSNHETEFGNHLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEVYGDVIIVERRISESTSSITLKDHQGKKVFSRKVDLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNEINKAHGIVEELEIAIRPIEKELNELQIKIKNMEHVEQISMQVQQLKKKLAWSWVYDVDKQLEEQNVRIEKLKNRIPTCQAKIDQQLHRVEKLKESCTKKKVEIASMLETTSQVKQMKENLSHSVSLATKEALELEQDCKCKISNIQKMVQQLKMLEQQMQDIHEQHVKNTQAEESDMEEKLKGLRDEVHAAELDLKSLKEEEAMLMNSISRQNDEIRKIADKILDHEKRYHVIMRNIRDLQQQQSNKITGFGGDKVMHLLRIIERYHQRFKMPPIGPIGAHLKLLNGNKWAVAVEYAIGRLLNSFIVTDHKDFHLLKQCAKEANYGHLQIIIYDFSTPRLTIPQHMLPDTKHPTTLSILQCENHTVINVLVDLGNVERQVLVNDYDIGKVVAFEQRIRNLKEVYTLEGCRMFSRGSVQTILPPSRRQRTGRLSSSVEDVIEKLHNEASDEQKAANDCKRNKREAEIKLEELDRNFNSMKRLCVNAGKSFTSKKLALEEAMHQRAAEISSTPLSSVDEIIEAISEIQKKIKEEQVLLDVLEQRRHEAAGKAKDLKVKFDKLCESANGEIAALEKAESELMEIEREMNSAKEAKDHYDGVMKNKVLRDIKEAEEHYMELTKRREVNVEKASIICCQKELDSLRGCDGNTPEQISAQLERLNQTLRRESQRYSESIDDLRMLYAKKERKIIKRQQVYKALRQKLDACQRALQLRSSKFQRNATYLKHQLSWKFNGHLRKKGISGVIRVNYEEKTLLIEVQMPQDASNKAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAQGSQWIFITPHDTSSVKAGDRIKKMQMAAPRS* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00099 1059 Coils Coil 196 237 - -
Rops3g00099 1059 Coils Coil 854 877 - -
Rops3g00099 1059 Coils Coil 347 367 - -
Rops3g00099 1059 Coils Coil 724 758 - -
Rops3g00099 1059 Coils Coil 642 683 - -
Rops3g00099 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 1049 IPR027417 -
Rops3g00099 1059 Coils Coil 369 445 - -
Rops3g00099 1059 Gene3D - 22 221 IPR027417 -
Rops3g00099 1059 Coils Coil 766 793 - -
Rops3g00099 1059 Pfam RecF/RecN/SMC N terminal domain 23 1054 IPR003395 -
Rops3g00099 1059 Coils Coil 802 822 - -
Rops3g00099 1059 SUPERFAMILY Smc hinge domain 459 618 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Rops3g00099 1059 Coils Coil 256 283 - -
Rops3g00099 1059 Gene3D - 797 1057 IPR027417 -
Rops3g00099 1059 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 8 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00099 Rops-Chr3 1201579 1236900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00099 20 1059 Structural Maintenance of Chromosomes family AT5G07660 58.750 0.0 1208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00099 K22804 - gmx:100816916 1685.62