Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops3g00098 | ATGGAGAAGAACAACAGTAGAGTCTGCAGGATTTGCGACAAGTACTTCTCCAGTGGAAAAGCCATGGGAGGCCACATGAGATCTCACTTTGCCAAACTGCCAATTCCTCCAAAGCCTGAAACCAAGAATCAAGCACAAGACAACTCAGCCGAGTTAACCCAGTATCCAATTCAATCTGCTCCTTCACTGATTCACCATCCCAAAAAGAAACCAACACAGAATTTTCGATCTTTGAAACGCAACTTCTTTGCCTTCCAGGCAGACTCAAACAGAGAAAATGAATCTGGGGCTTACCCTAAAAACCCAACCCGCAAAAGATCCAAATGCTGCCGCAAACTTATCGCAGCAGCTGATGCAAAAGCTCAACCAAAACAAATGAGTTCAATATCTGAAACTCTTCATGCCGAAGAAGCTGCTTGGTCTCTATTGATGCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGATCAAGACACAAAAAATGAAGGCAACCAACAAAATGGAGGCAAAGGACAGTGAAAATGGCGGAGATGACTCTCTTGTTCAAACTCACTCTCCAGCCAGGTTCAAGTGTGAGAGCTGCAGGAAAATGTTTCGATCTCATCAAGCTCTTAGTGGGCACAAAGCAAACGATAAGAAAAATCAGAATCTATGCCTAGAAGGTGGTGACCTTGAAGATCACAGAAGTGGCAACAATACTGATGTTGTAGATCGAAAAGTGTTCGAATGCCCATATTGCCACAGAGTGTTCAAGTCTGCTCAAGCACTTGGTGGACACAAGAGGGTACACTTCCCCAATACTATGGTTGCTAATGCTCATACCAGTGCTAATGAATTTAGAGGTATGTTGGTAGTAGATCTTAATTTTCCACCTCCGAGAGAAGATGAAGACGTTAGCCACATTGAATTTTTAACAGTGTCTGGTGAAGCATGA | 933 | 0.4319 | MEKNNSRVCRICDKYFSSGKAMGGHMRSHFAKLPIPPKPETKNQAQDNSAELTQYPIQSAPSLIHHPKKKPTQNFRSLKRNFFAFQADSNRENESGAYPKNPTRKRSKCCRKLIAAADAKAQPKQMSSISETLHAEEAAWSLLMLSKDKWPESKEIKTQKMKATNKMEAKDSENGGDDSLVQTHSPARFKCESCRKMFRSHQALSGHKANDKKNQNLCLEGGDLEDHRSGNNTDVVDRKVFECPYCHRVFKSAQALGGHKRVHFPNTMVANAHTSANEFRGMLVVDLNFPPPREDEDVSHIEFLTVSGEA* | 311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops3g00098 | 310 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 300 | IPR044303 | GO:0006355 | |
| Rops3g00098 | 310 | MobiDBLite | consensus disorder prediction | 158 | 177 | - | - | |
| Rops3g00098 | 310 | Pfam | C2H2-type zinc finger | 188 | 210 | - | - | |
| Rops3g00098 | 310 | Pfam | C2H2-type zinc finger | 240 | 263 | - | - | |
| Rops3g00098 | 310 | Pfam | C2H2-type zinc finger | 8 | 29 | - | - | |
| Rops3g00098 | 310 | SUPERFAMILY | beta-beta-alpha zinc fingers | 237 | 266 | IPR036236 | - | |
| Rops3g00098 | 310 | SMART | c2h2final6 | 241 | 263 | IPR013087 | - | |
| Rops3g00098 | 310 | SMART | c2h2final6 | 189 | 209 | IPR013087 | - | |
| Rops3g00098 | 310 | SMART | c2h2final6 | 7 | 29 | IPR013087 | - | |
| Rops3g00098 | 310 | Gene3D | Classic Zinc Finger | 157 | 266 | - | - | |
| Rops3g00098 | 310 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 9 | 29 | IPR013087 | - | |
| Rops3g00098 | 310 | SUPERFAMILY | beta-beta-alpha zinc fingers | 8 | 208 | IPR036236 | - | |
| Rops3g00098 | 310 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 7 | 34 | IPR013087 | - | |
| Rops3g00098 | 310 | MobiDBLite | consensus disorder prediction | 158 | 182 | - | - | |
| Rops3g00098 | 310 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 243 | 263 | IPR013087 | - | |
| Rops3g00098 | 310 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 241 | 263 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops3g00098 | Rops-Chr3 | 1190835 | 1191767 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops3g00098 | 9 | 301 | C2H2 Transcription Factor Family | AT3G60580 | 34.295 | 3.11e-40 | 140 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Rops3g00098 | zf-C2H2_6 | 3.8e-09 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops3g00098 | - | - | cam:101511854 | 318.161 |