Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00098 ATGGAGAAGAACAACAGTAGAGTCTGCAGGATTTGCGACAAGTACTTCTCCAGTGGAAAAGCCATGGGAGGCCACATGAGATCTCACTTTGCCAAACTGCCAATTCCTCCAAAGCCTGAAACCAAGAATCAAGCACAAGACAACTCAGCCGAGTTAACCCAGTATCCAATTCAATCTGCTCCTTCACTGATTCACCATCCCAAAAAGAAACCAACACAGAATTTTCGATCTTTGAAACGCAACTTCTTTGCCTTCCAGGCAGACTCAAACAGAGAAAATGAATCTGGGGCTTACCCTAAAAACCCAACCCGCAAAAGATCCAAATGCTGCCGCAAACTTATCGCAGCAGCTGATGCAAAAGCTCAACCAAAACAAATGAGTTCAATATCTGAAACTCTTCATGCCGAAGAAGCTGCTTGGTCTCTATTGATGCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGATCAAGACACAAAAAATGAAGGCAACCAACAAAATGGAGGCAAAGGACAGTGAAAATGGCGGAGATGACTCTCTTGTTCAAACTCACTCTCCAGCCAGGTTCAAGTGTGAGAGCTGCAGGAAAATGTTTCGATCTCATCAAGCTCTTAGTGGGCACAAAGCAAACGATAAGAAAAATCAGAATCTATGCCTAGAAGGTGGTGACCTTGAAGATCACAGAAGTGGCAACAATACTGATGTTGTAGATCGAAAAGTGTTCGAATGCCCATATTGCCACAGAGTGTTCAAGTCTGCTCAAGCACTTGGTGGACACAAGAGGGTACACTTCCCCAATACTATGGTTGCTAATGCTCATACCAGTGCTAATGAATTTAGAGGTATGTTGGTAGTAGATCTTAATTTTCCACCTCCGAGAGAAGATGAAGACGTTAGCCACATTGAATTTTTAACAGTGTCTGGTGAAGCATGA 933 0.4319 MEKNNSRVCRICDKYFSSGKAMGGHMRSHFAKLPIPPKPETKNQAQDNSAELTQYPIQSAPSLIHHPKKKPTQNFRSLKRNFFAFQADSNRENESGAYPKNPTRKRSKCCRKLIAAADAKAQPKQMSSISETLHAEEAAWSLLMLSKDKWPESKEIKTQKMKATNKMEAKDSENGGDDSLVQTHSPARFKCESCRKMFRSHQALSGHKANDKKNQNLCLEGGDLEDHRSGNNTDVVDRKVFECPYCHRVFKSAQALGGHKRVHFPNTMVANAHTSANEFRGMLVVDLNFPPPREDEDVSHIEFLTVSGEA* 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00098 310 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 300 IPR044303 GO:0006355
Rops3g00098 310 MobiDBLite consensus disorder prediction 158 177 - -
Rops3g00098 310 Pfam C2H2-type zinc finger 188 210 - -
Rops3g00098 310 Pfam C2H2-type zinc finger 240 263 - -
Rops3g00098 310 Pfam C2H2-type zinc finger 8 29 - -
Rops3g00098 310 SUPERFAMILY beta-beta-alpha zinc fingers 237 266 IPR036236 -
Rops3g00098 310 SMART c2h2final6 241 263 IPR013087 -
Rops3g00098 310 SMART c2h2final6 189 209 IPR013087 -
Rops3g00098 310 SMART c2h2final6 7 29 IPR013087 -
Rops3g00098 310 Gene3D Classic Zinc Finger 157 266 - -
Rops3g00098 310 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Rops3g00098 310 SUPERFAMILY beta-beta-alpha zinc fingers 8 208 IPR036236 -
Rops3g00098 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Rops3g00098 310 MobiDBLite consensus disorder prediction 158 182 - -
Rops3g00098 310 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Rops3g00098 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 263 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops3g00098 Rops-Chr3 1190835 1191767 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00098 9 301 C2H2 Transcription Factor Family AT3G60580 34.295 3.11e-40 140
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g00098 zf-C2H2_6 3.8e-09 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00098 - - cam:101511854 318.161