Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00097 ATGAAACCTTTTCTGCTCTTTCTCACATTCTCCTTCTTTTGCCAAACACAGCTAGTTTTCTCTGCCACAACTCCACCCCTACAACTCATCACCTTGCTTTCAATAAAATCCTCCCTCATAGACCCTCTGAAGAACCTCCATGACTGGGACCCCTCTCCCACCTTCTCCAACTCCAATTACCAAGACCCAATATGGTGTTCTTGGAGAGGCATCGTATGCCACTCAAAAACAGCACAAATCACCTCCCTTGACCTCTCTAACCTCAACCTTTCGGGCACAATCTCACGTGAAATCCGCTACCTAACCAGCTTAAACCACTTGAACCTCAGCAGAAATGACTTCAGTGGAACTTTCCAAGCAGCAATTTTCGAACTTACCCAGCTGAGGACTCTAGATATCAGCCACAACTCCTTCAACTCAACTTTCCCACCCGGAATATCAAAACTCAGGTTCTTGAGGGTCTTCAATGCTTACAGCAACAGCTTCACTGGGCCTCTACCTCAAGAGCTAATCAGGCTTCGGTTTCTAGAGCAACTCAACCTCGGAGGAAGCTACTTCAGGGACGAAATCCCACCAGGTTATGGCACTTTCCCTCGACTCAAGTTCCTAGATTTAGCAGGCAATGCCTTGGAAGGTCCACTACCACCTCAGCTAGGGTCATTAGCAGAGTTAGAACGCTTGGAAATCGGATACAACCCATTCTCAGGAACACTACCAGTGGAATTGGCAATGCTATCTAATCTGAAATACTTGGACATCTCATCTACCAACATTTCAGGAAGTGTGATCCCAGAACTTGGGAACTTGACCATGCTGGAGACACTGTTGCTCTTCAAAAATCGCCTAACAGGTGAAATCCCATCAAGCATAGGCAACTTGAAATCACTGAAAGCTCTTGACTTGTCAGACAACGAACTGAGGAGGTCAATTCCAACAGAAGTAACCATGCTAAAGGAACTAACCATGTTGAGCCTCATGGACAACAAGCTAACAGGAGAAATACCAATGGGAATAGGAGACCTTCCAAAACTTTACATTTTGCTCTTGTTCAACAACTCACTCAAGGGAATCCTACCACCCCAACTAGGCTCCAATGGGTTACTACAAAGACTAGACGTGTCCACCAACTCACTCCAAGGTCCAATCCCTGCAAATGTGTGCAAAGGTAACAACTTGGCAAAGCTCATACTTTTCAACAACGAATTCACCAGTGTTCTTCCACCATCACTTTCCAACTGCACCTCGCTCACCAGGGTTCGCATCCAAAATAACCACCTTAACGGTTCCATTCCACCGGGGCTAACACCCCTCCCTAACTTAACATTCCTTGACATGAGCAACAACAACTTCCAAGGTGAAATTCCACTTGAACTTGGTAACCTTCAGTACTTTAACATCTCTGGTAACTCCTTGGGAACCTCATTACCAAGTAACATATGGAACGCCACCAATCTTCAGATTTTCTCCGCCGCGTCGTCTAATATCACCGGCCAGATTCCTGATTTCATTGGGTGCCAAACCATTTACAGGATCGAATTGCAGGGAAACACCATTAATGGTAGCATTCCATGGGATATTGGTCACTGTCAGAAGCTGATTCAGTTGAATCTTAGTAGAAACTCACTCACCGGAATCATTCCTTGGGAAATTTCAGCTCTTCCTTCCATCACTGACGTTGATCTTTCTCATAATTCTCTCACCGGAACCATACCTTCCAACTTCAACAACTGCACCACTCTTGAGAACTTCAACGTTAGCTTCAACTCCCTCACCGGACCTATTCCTTCCTCCGGCATCTTCCCTAACCTTCATCCTTCTTCCTACTCCGGCAACCACGGTCTCTGCGGCCGTTTACTCGCGAATCCATGCTCTTCCAGCGAGAACGACGTCGACCTCCACCGTCAACAACCGAAGAGAACCGCCGGTGCAATTCTTTGGATTGTCGCCGCCGCGTTCGGGATCGGACTCTTCGTCCTCGTCGCCGGAACACGCTGTTTCCGCGCCAACTATAACCGTCGATTCGGCGGTGACGGTAACGAGATCGGACCGTGGAAGTTAACGGCGTTTCAACGGTTAAATTTCACGGCGGAGGATGTGCTCGAGTGTTTGTCGATGTCTGATAAGATCTTAGGAATGGGGTCCACTGGGACGGTTTATAGAGCAGAAATGCCAGGTGGCGAGATCATAGCCGTTAAGAAGCTTTGGGGGAAACACAAGGAGAGTAACATCAGACGGAGGAGAGGGGTTTTGGCTGAGGTGGATGTGTTGGGGAACGTGAGGCATAGGAACATAGTGAGATTGTTAGGGTGTTGCAGCAACAGGGAGTGCACCATGTTGCTTTATGAGTACATGCCCAATGGGAACTTGGATGATTTGTTGCATGCCAAAAATAAGGGGAATAATATGGTTGCTGATTGGTTCACCAGATATAAGATTGCACTGGGTGTGGCTCAGGGGATTTGCTATCTTCACCATGACTGTGATCCTGTCATCGTGCATCGTGATCTCAAACCCAGTAACATATTATTGGACGGTGAGATGGAAGCCAGAGTGGCAGATTTTGGTGTTGCCAAGTTGATCCAAACCGATGAATCCATGTCTGTCATTGCTGGATCCTATGGTTACATTGCTCCAGAATATGCTTATACACTTCAAGTTGATGAGAAGAGTGATATTTACAGCTATGGAGTGGTGTTGATGGAGATTTTAATTGGGAAACGTTCAGTGGATGCAGAATTTGGAGATGGGAATAGCATTGTGGATTGGGTTAGGTCTAAGATAAAGACTAAAGATGGGATTGATGATATATTGGATAAGAATGCAGGGGCAGGGTGTGCCTCAGTGAGGGAAGAGATGATACAAATGCTTAGAATTGCATTGCTTTGCACCAGCAGGAACCCAGCAGATAGACCTTCCATGAGAGATGTTGTGTTGATGCTGCAAGAGGCCAAGCCTAAAAGGAAATTGCTTGATAGTGTTGTTGTAGGTCGATGTCCTAGTGATAATGTGGTTGGTGGTGGTGGTGATATTCCTTTGGCACAAAAGCCAATGGTGGAAAGCTAA 3063 0.4646 MKPFLLFLTFSFFCQTQLVFSATTPPLQLITLLSIKSSLIDPLKNLHDWDPSPTFSNSNYQDPIWCSWRGIVCHSKTAQITSLDLSNLNLSGTISREIRYLTSLNHLNLSRNDFSGTFQAAIFELTQLRTLDISHNSFNSTFPPGISKLRFLRVFNAYSNSFTGPLPQELIRLRFLEQLNLGGSYFRDEIPPGYGTFPRLKFLDLAGNALEGPLPPQLGSLAELERLEIGYNPFSGTLPVELAMLSNLKYLDISSTNISGSVIPELGNLTMLETLLLFKNRLTGEIPSSIGNLKSLKALDLSDNELRRSIPTEVTMLKELTMLSLMDNKLTGEIPMGIGDLPKLYILLLFNNSLKGILPPQLGSNGLLQRLDVSTNSLQGPIPANVCKGNNLAKLILFNNEFTSVLPPSLSNCTSLTRVRIQNNHLNGSIPPGLTPLPNLTFLDMSNNNFQGEIPLELGNLQYFNISGNSLGTSLPSNIWNATNLQIFSAASSNITGQIPDFIGCQTIYRIELQGNTINGSIPWDIGHCQKLIQLNLSRNSLTGIIPWEISALPSITDVDLSHNSLTGTIPSNFNNCTTLENFNVSFNSLTGPIPSSGIFPNLHPSSYSGNHGLCGRLLANPCSSSENDVDLHRQQPKRTAGAILWIVAAAFGIGLFVLVAGTRCFRANYNRRFGGDGNEIGPWKLTAFQRLNFTAEDVLECLSMSDKILGMGSTGTVYRAEMPGGEIIAVKKLWGKHKESNIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGNLDDLLHAKNKGNNMVADWFTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILIGKRSVDAEFGDGNSIVDWVRSKIKTKDGIDDILDKNAGAGCASVREEMIQMLRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLLDSVVVGRCPSDNVVGGGGDIPLAQKPMVES* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00097 1020 Gene3D Ribonuclease Inhibitor 198 261 IPR032675 -
Rops3g00097 1020 Gene3D Ribonuclease Inhibitor 262 319 IPR032675 -
Rops3g00097 1020 SUPERFAMILY Protein kinase-like (PK-like) 707 980 IPR011009 -
Rops3g00097 1020 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 676 783 - -
Rops3g00097 1020 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Rops3g00097 1020 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515
Rops3g00097 1020 Gene3D Phosphorylase Kinase; domain 1 685 783 - -
Rops3g00097 1020 Pfam Leucine rich repeat N-terminal domain 28 73 IPR013210 -
Rops3g00097 1020 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Rops3g00097 1020 ProSiteProfiles Protein kinase domain profile. 704 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00097 1020 Gene3D Transferase(Phosphotransferase) domain 1 784 994 - -
Rops3g00097 1020 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Rops3g00097 1020 Pfam Protein kinase domain 707 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00097 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Rops3g00097 1020 FunFam leucine-rich repeat receptor-like protein kinase TDR 784 992 - -
Rops3g00097 1020 Gene3D Ribonuclease Inhibitor 337 631 IPR032675 -
Rops3g00097 1020 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 344 984 - -
Rops3g00097 1020 FunFam Leucine-rich repeat receptor-like protein kinase TDR 314 625 - -
Rops3g00097 1020 SMART serkin_6 704 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00097 1020 FunFam Leucine-rich repeat receptor-like protein kinase 28 192 - -
Rops3g00097 1020 SUPERFAMILY RNI-like 82 403 - -
Rops3g00097 1020 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 215 310 - -
Rops3g00097 1020 Pfam Leucine rich repeat 272 330 IPR001611 GO:0005515
Rops3g00097 1020 SUPERFAMILY L domain-like 309 623 - -
Rops3g00097 1020 SMART LRR_typ_2 458 482 IPR003591 -
Rops3g00097 1020 SMART LRR_typ_2 101 120 IPR003591 -
Rops3g00097 1020 SMART LRR_typ_2 553 576 IPR003591 -
Rops3g00097 1020 SMART LRR_typ_2 197 221 IPR003591 -
Rops3g00097 1020 SMART LRR_typ_2 125 149 IPR003591 -
Rops3g00097 1020 SMART LRR_typ_2 341 365 IPR003591 -
Rops3g00097 1020 SMART LRR_typ_2 293 317 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00097 Rops-Chr3 1173921 1178214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00097 3 988 Receptor kinase-like Gene Family AT1G08590 43.124 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops3g00097 Pkinase 9.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00097 - - gmx:100813189 1726.06