Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00090 ATGGACGCTCTCGATTCGAACCCTCCCTACGATCCACCTCCGCAGAACGTTGCATCATCAGAGTATCACCACCAAACGCAATACGAATCCCAAACCCTATTTCCCGATGGTCAAAACGCCAACGGTATTAACGGAAACCCATCGGAGAATGGCCAGGGCGGCGGAGATAATATTTCGCTGCCTCAGATTGCGAAATCACTGGTCTCCGATAATGGTTTGACCGGTAACACCCGTAGCGGCACCGACAAGGATCAATCTGGTGGCGAGGAGGAGACTACCAGCAAACGCCGCCGTCGGAGCCGGTGGGACCCGCAGCCGGAGTCTAACGACCAGAGCGGTGGCGAAGGGGGTGGGGGAACGAAGAAGAGAAAGTCTCGTTGGGCCGACGATGAGCCGAAACCGGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAATTCGATCCTGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTAGAATGTTACAGTCGGGTTTGCCTTTAGATGATCGACCAGAAGGTGCTCGGTCTCCTTCGCCTGAACCTATATATGATAATATGGGGATTAGAATTAACACCAGAGAGTATCGTGCGCGTGAAAGATTGCAAAAAGAGAGACAAGAAATTATATCCCAGATTATAAAGAAAAACCCCGCATTTAAGCCACCTGCAGATTATAGGCCTCCAAAGCTTCAGAAGAAGCTTTATATACCCATGAAAGAATACCCTGGTTACAATTTCATAGGGCTTATTATTGGTCCTAGAGGTAACACACAGAAACGGATGGAGAAAGAAACCGGTGCTAAGATTGTGATTCGAGGTAAAGGGTCGGTGAAAGAAGGGAGGTTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAGGATTTACATGTTCTAGTGGAGGCAGAGACGCAGGAGGCGCTTGAAGCAGCTGCGGGTATGGTGGAGAAGCTCTTGCAACCCGTGGACGAGGTATTGAATGAGCATAAGAGGCAACAACTTAGGGAACTTGCGGCCTTAAATGGGACCATTAGGGATGAAGAGTATTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTACAAGGACATCAACATTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGACGAGTATCAGAACTTCCTAGCAGAGTTGGGAGGTTCAGTTCCTGAATCTGCAACGAAGCAAACCAGTACATTGGCAATTGGTTCAGGCAATTCTGGAAACAATCCTCCTTGGGCTAACAATTCTGGCTCGACTGGTGGCACCGCACAAGCTGGTTTAGGGGCTGGTGCAGTTAAAAAGGAAATTGATGATACTAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGCCTGATCCAATTGTTTCAGCAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAATGACAGGTTTAAGTAAAGGATACGGATTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATCTTGGCCATGAATGGTTATCGTCTTGAGGGTCGAACCATTGCAGTCAGAGTTGCGGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAACATCTGCTGTGCCCACCTATCCTGTTCCGAGCCAACCACTTGGTGCCTATCCGTCCCAACAATATATTGCCGGTGGTCCCCTAGGGAGTGCTCCACCTGTGAGTTACGGCGGCACTCCAGTCCCATAG 1809 0.4842 MDALDSNPPYDPPPQNVASSEYHHQTQYESQTLFPDGQNANGINGNPSENGQGGGDNISLPQIAKSLVSDNGLTGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPESNDQSGGEGGGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGSGNSGNNPPWANNSGSTGGTAQAGLGAGAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPTSAVPTYPVPSQPLGAYPSQQYIAGGPLGSAPPVSYGGTPVP* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00090 602 FunFam splicing factor 1 354 407 - -
Rops3g00090 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 549 IPR000504 GO:0003723
Rops3g00090 602 MobiDBLite consensus disorder prediction 431 452 - -
Rops3g00090 602 Pfam KH domain 249 322 IPR004088 GO:0003723
Rops3g00090 602 SMART c2hcfinal6 381 397 IPR001878 GO:0003676|GO:0008270
Rops3g00090 602 SMART c2hcfinal6 355 371 IPR001878 GO:0003676|GO:0008270
Rops3g00090 602 Gene3D - 148 225 IPR047086 -
Rops3g00090 602 MobiDBLite consensus disorder prediction 117 133 - -
Rops3g00090 602 SMART kh_6 234 326 IPR004087 GO:0003676
Rops3g00090 602 ProSiteProfiles Zinc finger CCHC-type profile. 356 370 IPR001878 GO:0003676|GO:0008270
Rops3g00090 602 PANTHER RNA-BINDING PROTEIN RELATED 84 588 IPR045071 -
Rops3g00090 602 MobiDBLite consensus disorder prediction 279 300 - -
Rops3g00090 602 MobiDBLite consensus disorder prediction 18 82 - -
Rops3g00090 602 Pfam Splicing factor 1 helix-hairpin domain 123 230 IPR032570 -
Rops3g00090 602 FunFam splicing factor-like protein 1 226 354 - -
Rops3g00090 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 542 IPR000504 GO:0003723
Rops3g00090 602 CDD KH-I_BBP 233 326 - -
Rops3g00090 602 MobiDBLite consensus disorder prediction 170 189 - -
Rops3g00090 602 Gene3D K Homology domain, type 1 226 354 IPR036612 GO:0003723
Rops3g00090 602 ProSiteProfiles Zinc finger CCHC-type profile. 382 396 IPR001878 GO:0003676|GO:0008270
Rops3g00090 602 MobiDBLite consensus disorder prediction 1 135 - -
Rops3g00090 602 FunFam splicing factor-like protein 1 451 553 - -
Rops3g00090 602 Gene3D - 437 553 IPR012677 -
Rops3g00090 602 ProSiteProfiles Type-1 KH domain profile. 249 321 - -
Rops3g00090 602 MobiDBLite consensus disorder prediction 83 105 - -
Rops3g00090 602 SUPERFAMILY Retrovirus zinc finger-like domains 352 398 IPR036875 GO:0003676|GO:0008270
Rops3g00090 602 SMART rrm1_1 472 545 IPR000504 GO:0003723
Rops3g00090 602 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 234 360 IPR036612 GO:0003723
Rops3g00090 602 Gene3D - 355 407 - -
Rops3g00090 602 SUPERFAMILY RNA-binding domain, RBD 467 559 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00090 Rops-Chr3 1098786 1101307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00090 471 602 Eukaryotic Initiation Factors Gene Family AT3G16380 31.429 7.85e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00090 K13095 - gmx:100800982 1012.68