Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00081 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATACTGCACCCATAACAAAGTCAAGACTGCATGTGCATTCCAGTTTGTTGCCTTATTCCCATTCTGGGGCAACCTTTCCACCTGCTATGTTATTGACTATCCCAAGGAAGAAGACAGGAATTCGTGAAGATGTGCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCCAAGAACATAACAAAGGATGTTAGTCATGGTTTCGCGTCATCTGAAGCTGATACCACTGGTGCTTATTTTTCCTGGCTGCTAAAATATCCCTCAGCACTTACATCTTTTGATCAAATTACAAACTACGCAAAAGGCAAAAGAATTGCATTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGCGCTTTCATGTCTGACAATATGCGTGCTGCCGTCAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGCAGAAGTCGTGACAAGGTATACGAATTTATAGGACTAACAGAACTCTACTATGCTGGTAGTCATGGGATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAACCACCCTAATTGCATCATTAGATCTACAGACAAGCAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCTTGATTAATGAGGTATTTAATTCTCTCGTTGAGTGTACAACTGACATTAAAGGAGCAAAAATCGAGAACAATAAATTTTGTGTATCTGTACATTACCGCAATGTAGATGAGAAGAGTTGGGATTTGGTGGGGCAACGTGTTAATGATGTTCTAAAGCGCTATCCACGTTTGCGATTAACTCATGGCCGCAAGGTTTTAGAGGTCCGACCCGTGATTAACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGGCTCAACAACTGTGATGATGTGCTACCTATATATATTGGAGATGATCGGACAGATGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCAGCACCAAAGGAAAGCAATGCAATTTACTCTCTCCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCGCTTGTGTTATGGAAGTCAAGCCCCTTAAAAAGCCTTATATAA 1173 0.4118 MDLKSNHTPVLTDTAPITKSRLHVHSSLLPYSHSGATFPPAMLLTIPRKKTGIREDVRSSGWLDAMKSSSPPPKNITKDVSHGFASSEADTTGAYFSWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFIGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIIRSTDKQGKEVNLFQPAAEFLPLINEVFNSLVECTTDIKGAKIENNKFCVSVHYRNVDEKSWDLVGQRVNDVLKRYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSSPLKSLI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00081 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 384 IPR044651 GO:0004805|GO:0005992
Rops3g00081 390 NCBIfam HAD-IIB family hydrolase 123 342 IPR006379 -
Rops3g00081 390 NCBIfam trehalose-phosphatase 220 379 IPR003337 GO:0003824|GO:0005992
Rops3g00081 390 SUPERFAMILY HAD-like 122 381 IPR036412 -
Rops3g00081 390 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Rops3g00081 390 CDD HAD_TPP 122 373 - -
Rops3g00081 390 Gene3D - 121 210 IPR023214 -
Rops3g00081 390 Gene3D - 231 387 IPR023214 -
Rops3g00081 390 FunFam Trehalose 6-phosphate phosphatase 121 211 - -
Rops3g00081 390 FunFam Trehalose 6-phosphate phosphatase 229 388 - -
Rops3g00081 390 Pfam Trehalose-phosphatase 124 369 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00081 Rops-Chr3 1017393 1023489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00081 115 378 Trehalose Biosynthesis Gene Families AT1G70290 26.241 2.30e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00081 K01087 - gmx:100819495 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00081 3 1017393 1023489 Rops3g00081 3 1017393 1023489 ECH