Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00077 ATGAATACTTTTTCTCATGTTCCCCCGGGTTTTAGGTTTCATCCCACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAATTACTTCAAGGAGGGTTGACCTTGATGTCATAAAAGATGTTGACCTTTACAAAATTGAGCCCTGGGATCTTCAAGGTAGTAGTGAGTTCCTGGCATCTAAATTCAAGAAGGACAATTTTATTGGTGAAAGATATATTGTTAACTTGTGTACTATTTTCCTTTTCGTTTTAAAATTTAAAGAGATATGCAGAATAGGAGCAGAAGAGCAAAATGAATGGTATTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGATTCTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCTAAGCATGACCTGATAGGGATGAGAAAAACCTTAGTCTTCTATAAAGGTCGAGCTCCGAATGGTCAAAAGTCAGATTGGATAATGCATGAGTATCGGCTTGAAACTGATGAAAATGGCGCACCACAGGCAAGTTTCTGA 549 0.3825 MNTFSHVPPGFRFHPTDEELVDYYLRKKITSRRVDLDVIKDVDLYKIEPWDLQGSSEFLASKFKKDNFIGERYIVNLCTIFLFVLKFKEICRIGAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGAPQASF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00077 182 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 172 - -
Rops3g00077 182 SUPERFAMILY NAC domain 5 56 IPR036093 GO:0003677|GO:0006355
Rops3g00077 182 ProSiteProfiles NAC domain profile. 7 182 IPR003441 GO:0003677|GO:0006355
Rops3g00077 182 Gene3D NAC domain 16 181 IPR036093 GO:0003677|GO:0006355
Rops3g00077 182 Pfam No apical meristem (NAM) protein 8 170 IPR003441 GO:0003677|GO:0006355
Rops3g00077 182 SUPERFAMILY NAC domain 95 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00077 Rops-Chr3 972698 973246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00077 1 179 NAC Transcription Factor Family AT1G12260 69.832 2.17e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g00077 NAM 3.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00077 - - mof:131146427 281.182