Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00076 ATGGCAATCATGGGAAAGATATTCTTGACACTGTTATTGTTGTCATCAGTTTTCTCAATAGCCTCCTCATCAAGAAGAGGAAAATCTTCAAAGAGCAACATAGATTGGTGGTGTAACCAAACCCCACACCCTGAGCCATGCAAATACTACATGAAGCAAAACCATTACCCTCGCCGACTCAAACACAAATCCGAATTCCGGAAATATCTGATTCACATGGCCTTAGAGGGAGCAGTTATCACCAAAAGGCAAGCACATGATATTAAACAAAACTGGGTTACCAAGAGGCAGAGATCTGTTTTCAGAGATTGTTTGACGCTATATGACAACACTGTCTTCCATCTAAATCGTACCGTTCATGGCCTTCATGTCAAGAAGAGAAGCTGTTCATCCTTTGATGCACAAACGTGGCTCAGCACTGCTCGTACAAACATTGAAACCTGTCTAAACGGGGCCTTAGAACTAAGCATTCCAGGTTTCATCATGCCACTCGCGAGAAATAACGTGTCGGAGATTATAAGCAATAGCTTATTTGTCAACTGGGGTTTTGTGAAACAAGAAGCTGTTAGGTACACTGCAGATACGGAAGATGGGTTTCCAAGTTGGTTTTCAATGCGTGAGAGGAAGATGTTGCAGTCTTCTTCAATAAAGGCACATCTTGTGGTGGCCAAAGATGGTTCTGGACATTTCAGGACTGTCCAAGCTGCTATCAATGCCGCGGCAAGGAGAAGGTTCAAGACAAGGTTTATTATACGTATCAAGAGAGGAGTTTATAAAGAGAATATTGAGGTTGACAAGGCCAACGACAACATCATGTTGGTTGGTGATGGGATGAAGAATACTATAATAACAGGTTCCAGGAGTGTTCAAGCAGGCATTACCACCTATAGCTCTGCAACAGCAGACCTGAAGCCAGTTGTGGGCAAGTTCAAAACCTTCTTGGGCCGCCCTTGGCAGAGATACTCTAGAGTTGTGGTCATGAAATCGTTCATGGATAGCTTGGTTAACCCAATGGGTTGGTCTCCATGGGGAGGTACTAATTTTGCTCAGAATACTCTCTATTATGGAGAGTACAGAAACTTTGGGCCTGGCTCATCCACAAGAAACAGGGTAAAGTGGCCTGGTTTTCATGCTATAACCAGCCCAGCTGAGGCATCACGCTTCACCGTTGCTAACCTCCTTGCTGGCCGCACGTGGTTACCTGCCACTGGTGTGCCATTTACTTCTGGCCTTTAA 1236 0.4458 MAIMGKIFLTLLLLSSVFSIASSSRRGKSSKSNIDWWCNQTPHPEPCKYYMKQNHYPRRLKHKSEFRKYLIHMALEGAVITKRQAHDIKQNWVTKRQRSVFRDCLTLYDNTVFHLNRTVHGLHVKKRSCSSFDAQTWLSTARTNIETCLNGALELSIPGFIMPLARNNVSEIISNSLFVNWGFVKQEAVRYTADTEDGFPSWFSMRERKMLQSSSIKAHLVVAKDGSGHFRTVQAAINAAARRRFKTRFIIRIKRGVYKENIEVDKANDNIMLVGDGMKNTIITGSRSVQAGITTYSSATADLKPVVGKFKTFLGRPWQRYSRVVVMKSFMDSLVNPMGWSPWGGTNFAQNTLYYGEYRNFGPGSSTRNRVKWPGFHAITSPAEASRFTVANLLAGRTWLPATGVPFTSGL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00076 411 SMART PMEI_2 29 179 IPR006501 GO:0004857
Rops3g00076 411 Pfam Pectinesterase 300 396 IPR000070 GO:0030599|GO:0042545
Rops3g00076 411 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 181 IPR035513 -
Rops3g00076 411 PANTHER PECTINESTERASE 16 301 - -
Rops3g00076 411 SUPERFAMILY Pectin lyase-like 215 410 IPR011050 -
Rops3g00076 411 CDD PMEI-like_3 36 180 - -
Rops3g00076 411 Pfam Plant invertase/pectin methylesterase inhibitor 33 177 IPR006501 GO:0004857
Rops3g00076 411 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 179 IPR035513 -
Rops3g00076 411 Gene3D - 212 301 IPR012334 -
Rops3g00076 411 Gene3D - 302 411 IPR012334 -
Rops3g00076 411 NCBIfam pectinesterase inhibitor domain 7 180 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00076 Rops-Chr3 952583 954441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00076 275 411 Carbohydrate Esterase AT3G47400 61.702 2.29e-50 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00076 K01051 - gmx:100807908 415.616