LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g00067	ATGTCATCGTCGAACCCTCCGCCGCCGCCTCCAGGAGGCGATCCCGCTCCAGGGACGCCGTCCGCCAGAGCTAAGCTCCAGAAAATGCCCCCAATTCTAAATCGACGCAGCACTGCATCATCACCCGATGAAGAAGAACGTCAACGTGAACGTGTTGATTCTTCCATCTTGGTTGCCTCTTCTTTAGGTCTCAACAACATTCGCACCCGCTCCTCTTGTTCTCCTCTTCGCTGTTATTCCTCCGTTGGAGTCCCTTCCTTCTTGGCAAACGATGCTGTCGCCATTGCCAAACCTAGATCCAAAGCTTCCCTTCCCAAGGACCTAGGAGAAAAAGCTCTTTGGGGTCAATCCAAATCGTTGAAAGCTCATTCACAACTCCTTCCTGTGCTAGAGGGTAATCATGCAGCTTTCGCCAAAGAAATACAATCCCCACGTTTTCGGGAAATCCTGAGACTTACGAGTGGCCGCAAAAAAGTACATGCTGATATTAAAAGCTTTTCCCATGAACTCAACTCTAGAGGAGTTAGACCTTTTCCAATTTGGAAACATCGTGCCTTTGGCCATATGGAGGAAGTCATGGCGGCAATTAGAGCCAAGTTTGAAAAATTGAAGGAAGAAGTTGATTCTGACTTGGGTGGTTTCGCTGGAGATTTGGTGGGTACTCTTGAAAAGATTTCACGGTCTCATCCTGAATGGAAAGAGAGATTGGAGGATCTGTTGGTTGTTGCTCGACAATGTGCAACGATGTCACCTTCTGAGTTTTGGGTCAAATGCGAAACTATTGTTCAAAATCTGGATGACAAGCGTCAAGAATTACCAGTGGGGATCCTCAAGCAGGCTCATACACGCCTGCTATTCATTCTCACTAGATGCACTCGCCTAGTGCAATTTCAGAAGGAAACTGGCTATGAACAAGATCACATTCTGGGTCTTCACCAGCTCAGCGATCTCGGAGTTTATCCAGAACAAATTTTGAAGGCTACACAGGAGAAATCCAGTGCTCCACCTGGTGGACATGAGATGGCTGAGAAACAATTAAAAAAGTCACATGGAAAAGAGCTAAGCAAACGGATAACAACAAAACAAGGTCAAGTTGACCAAAGTACAAGCGTTGTGATTGACAATATGGAGGTTGCTACAGCCAAAAGTGTTGAATCGACTCCTGGCAGCTATAGGATGTCTTCTTGGAAAAAGCTTCCATCTGCTATTGAGAAAAAACGCAAAGGTCAAGATGCCGTAGATTCCCCATCCAAAGTTGAACCGGGTCAGTTGCTTGTCAAAGATGAAAATGCTGAAAATTTGGATAATTTGTCATGTCATCCTGAACAATCACAGTCATCTTCCAGAACGCGAAAGTTATCTTGGGGATTCTGGGGAGATCAGCAAAATCTATCATATGATGATTCAATGATCTGCAGGATTTGTGAGGTTGAAATACCAATCGTACATGTGGAGGAGCATTCTCGAATATGCACAATTGCGGATAGATGTGATTTGAAAGGCTTAACTGTAAATGACCGGCTTGAAAGAGTTTCTGAAACTATTGAAAGGATACTGGAATCCTGGACACCAAAAAGCACACCAAAGAGCATTGATACTCCTGTAGAAAGCTTCGAGGTTGCTAGAGTGTCAACATCAAGTGTGCATGAAGAGTTCAATGAGCTATCTCTAGAACGAAACGACCTGTCTTGTAGATGCTCTGAAGACGTCCTCGACTCTACTGCTGAAGTTGACAATACTTTTGTTGTGGATGATCTGAACCTTTCATCCGAAATATCATGTGAAGCACGTATTAGCTTAAAACCTGATCAAGGCACAAAGGTATCTTCGGCTGGAAGCCTGACACCGAGATCACCATTGCTAACACCACGAACCAGTCAAATAGAAATGTTATTAAGTGGACGAAGAACAATGTCTGAACTTGAGAGTTATGATCAGATACACAAGCTAGTTGAAATAGCTCGTGCTGTTGCAAATGTGAACAACTGTGACTATAGTGCTTTAGAGTATATGCTCGATCGCTTAGAAGACCTGAAATACGCAATTCAGGACAGAAAAGTGGATGCACTTATAGTGGAGACTTTTGGACGACGTATAGAGAATCTTTTGCAGGAGAAATATATATCCCTTTGTGGGCAGATAGAAGATGAAAAGGTAGACTCATCAAATGGCATGGCTGATGAAGAGAGTTCAGTGGAAGATGATCAAGTCCGTAGCCTTCGTGCTAGCCCAATTAATGCTTGTTCTAAGGACCGAACCTCGATTGAAGACTTCGAAATAATAAAGCCAATAAGCAGAGGCGCATTTGGACGGGTTTTTCTTGCCCGAAAAAGAGCGACCGGTGATTTATTTGCTATAAAGGTTCTGAAAAAGAAAGATATGATCCGTAAAAATGCAGTTCAAAGTATTTTGGCCGAGCGAGACATCCTTATATCTGTTCGAAACCCTTTCGTGGTCCGATTTTTCTACTCTTTCACATGTAGGGAAAATCTTTATCTGGTTATGGAGTATTTAAATGGCGGAGATCTTTATTCTCTGTTGAGAAATCTAGGGTGCTTGGATGAAGATATGGCTCGTGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTACATTCCTTAAATGTGATTCACAGAGACTTGAAGCCAGATAACTTGTTGATTGGTCAAGATGGTCATCTTAAGCTGACAGATTTTGGGCTTTCTAAGGTTGGTCTTATCAACAGCACAGATGATTTAGCAGCACCATCATTTTCCACTTGCGGTTTCCTAGGAGATGATGAACCAAAACCTCAACATTCTTCAAAAAGGGAAGCACGCCAAAAACAATCAGTAGTGGGCACCCCAGATTATTTGGCGCCTGAAATACTTCTTGGCATGGGACATGGTGCAACTGCAGATTGGTGGTCCGTGGGGGTCATACTTTATGAGCTTATTGTGGGTATTCCACCATTTAATGCAGAACATCCCCAGCAAATTTTTGATCACATAATTAACAGAGACATACAATGGCCCAAGATTCCCGAGGAGATCAGCTTTGATGCATATGATTTGATGAATAAATTATTGAATGAAAATCCCGTCCAAAGATTAGGTGCAACGGGAGCTACAGAAGTTAAACGCCATGCTTTCTTCAAGGATATTAGTTGGGATACTCTAGCAAGGCAGAAGGCTATGTTCATACCATCAGCTGAAGCTCTTGATACAAGTTATTTTATGAGTCGGTACGTTTGGAATCCAGAGGATGAACATTGTGCTGGAGGTAGTGATTTCGATGACATTACTGAAACATGCAGCAGTGGTTCAGGCAGCGATTTATTAGAAGAAGATGGTGATGAATGTGGTAGTTTAGCAGACTTCAGTGGTCCAGCTCTTGAGGTGCAGTACTCGTTTAGTAATTTCTCATTTAAGAACTTGTCTCAGCTAGCATCTATCAATTATGATCTGGTGATTAAGAACTCCAAGGAATCACCCGATGACTCCAACCCATCTGTTTCACATGGCTAA	3510	0.4285	MSSSNPPPPPPGGDPAPGTPSARAKLQKMPPILNRRSTASSPDEEERQRERVDSSILVASSLGLNNIRTRSSCSPLRCYSSVGVPSFLANDAVAIAKPRSKASLPKDLGEKALWGQSKSLKAHSQLLPVLEGNHAAFAKEIQSPRFREILRLTSGRKKVHADIKSFSHELNSRGVRPFPIWKHRAFGHMEEVMAAIRAKFEKLKEEVDSDLGGFAGDLVGTLEKISRSHPEWKERLEDLLVVARQCATMSPSEFWVKCETIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKETGYEQDHILGLHQLSDLGVYPEQILKATQEKSSAPPGGHEMAEKQLKKSHGKELSKRITTKQGQVDQSTSVVIDNMEVATAKSVESTPGSYRMSSWKKLPSAIEKKRKGQDAVDSPSKVEPGQLLVKDENAENLDNLSCHPEQSQSSSRTRKLSWGFWGDQQNLSYDDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLTVNDRLERVSETIERILESWTPKSTPKSIDTPVESFEVARVSTSSVHEEFNELSLERNDLSCRCSEDVLDSTAEVDNTFVVDDLNLSSEISCEARISLKPDQGTKVSSAGSLTPRSPLLTPRTSQIEMLLSGRRTMSELESYDQIHKLVEIARAVANVNNCDYSALEYMLDRLEDLKYAIQDRKVDALIVETFGRRIENLLQEKYISLCGQIEDEKVDSSNGMADEESSVEDDQVRSLRASPINACSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKKDMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHLKLTDFGLSKVGLINSTDDLAAPSFSTCGFLGDDEPKPQHSSKREARQKQSVVGTPDYLAPEILLGMGHGATADWWSVGVILYELIVGIPPFNAEHPQQIFDHIINRDIQWPKIPEEISFDAYDLMNKLLNENPVQRLGATGATEVKRHAFFKDISWDTLARQKAMFIPSAEALDTSYFMSRYVWNPEDEHCAGGSDFDDITETCSSGSGSDLLEEDGDECGSLADFSGPALEVQYSFSNFSFKNLSQLASINYDLVIKNSKESPDDSNPSVSHG*	1170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g00067	1169	Pfam	Protein kinase domain	758	1046	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g00067	1169	PANTHER	SERINE/THREONINE-PROTEIN KINASE	448	1121	-	-
	Rops3g00067	1169	Gene3D	Transferase(Phosphotransferase) domain 1	842	1064	-	-
	Rops3g00067	1169	MobiDBLite	consensus disorder prediction	927	946	-	-
	Rops3g00067	1169	SUPERFAMILY	Protein kinase-like (PK-like)	755	1071	IPR011009	-
	Rops3g00067	1169	FunFam	probable serine/threonine protein kinase IREH1	756	845	-	-
	Rops3g00067	1169	MobiDBLite	consensus disorder prediction	329	363	-	-
	Rops3g00067	1169	ProSiteProfiles	Protein kinase domain profile.	758	1046	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g00067	1169	Gene3D	Phosphorylase Kinase; domain 1	756	1073	-	-
	Rops3g00067	1169	CDD	STKc_MAST_like	764	1051	-	-
	Rops3g00067	1169	MobiDBLite	consensus disorder prediction	1	52	-	-
	Rops3g00067	1169	MobiDBLite	consensus disorder prediction	1	17	-	-
	Rops3g00067	1169	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	877	889	IPR008271	GO:0004672\|GO:0006468
	Rops3g00067	1169	SMART	serkin_6	758	1046	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops3g00067	1169	MobiDBLite	consensus disorder prediction	341	359	-	-
	Rops3g00067	1169	ProSiteProfiles	AGC-kinase C-terminal domain profile.	1047	1147	IPR000961	GO:0004674\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g00067	Rops-Chr3	869672	883948	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g00067	26	1166	AGC Kinase Gene Family	AT5G62310	64.395	0.0	1460

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_MAST	Rops3g00067		Pkinase	4.7e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g00067	-		-	gmx:100817975	1922.9