Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00061 ATGGGTCTTCTTATATGAAGAGAGCACAGCCGCATTCTGCTCCCAATTCTCAAAGAGTGGACCATAATAACAATGGCTTACGCTGCAATGAAACCCACTAAACCAGGCTTGGAGGAGTCACAAGAGCAGATCCACAAGATCAGGATCACCCTTTCCTCCAAGAATGTCAAGAATCTCGAGAAGGTTTGCACCGACCTGGTTCGTGGTGCCAAGGACAAGCGTCTCAGGGTCAAGGGACCTGTTAGGATGCCAACTAAAGTTCTTAACATCACCACCAGGAAATCCCCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTCATTGATCTCTACAGTTCCCCGGATGTGGTCAAGCAGATTACCTCTATCACAATTGAACCTGGTGTGGAGGTTGAGGTGACCATTGCGGATGCTTGA 441 0.4875 MGLLI*REHSRILLPILKEWTIITMAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00061 145 NCBIfam 30S ribosomal protein S10 44 142 IPR005729 GO:0003735|GO:0006412|GO:0015935
Rops3g00061 145 Pfam Ribosomal protein S10p/S20e 47 141 IPR027486 -
Rops3g00061 145 Gene3D Ribosomal protein S10 domain 29 144 IPR036838 -
Rops3g00061 145 FunFam 40S ribosomal protein S20 30 144 - -
Rops3g00061 145 ProSitePatterns Ribosomal protein S10 signature. 69 84 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops3g00061 145 PRINTS Ribosomal protein S10 family signature 80 95 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g00061 145 PRINTS Ribosomal protein S10 family signature 102 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g00061 145 PRINTS Ribosomal protein S10 family signature 45 58 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g00061 145 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 33 144 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g00061 145 Hamap 30S ribosomal protein S10 [rpsJ]. 43 142 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g00061 145 SMART Ribosomal_S10_2 47 141 IPR027486 -
Rops3g00061 145 SUPERFAMILY Ribosomal protein S10 45 142 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00061 Rops-Chr3 800278 804376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00061 24 145 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 91.803 3.42e-79 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00061 K02969 - gmx:100500017 240.35