Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00056 ATGGCTTCTTCTAATGGTGGTGTTCCGCCTGGATTTAGATTTCATCCGACCGATGAAGAGCTGCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTGGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGCAGAATTGGATCAACTCCACAAAACGACTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCTACAGGATCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAGGCTACCGGAAGAGACAAGTGCATCAGGAATAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTCTTCTACAAAGGAAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTACCGCCTCGAAGATGGCAATGATCCTCAAGGAAACACCGATGAAGATGGGTGGGTGGTGTGCAGGGTGTTCAAGAAGAAGAACCTATTCAAGATTGGAAATGAAGGTGGGTCCACACACAATCAAGAGCAACAAATCAACGATTCCTTCATGCACAGAGAGAACCAGTACTTACTCCCTCAACAACAAAACACTAGGAACCTATCATCAGGGTTTGAGCTCGATAAACCCGAGCTTGCTCTCCACTATCCACATTTGCAAAATCCTCAATACTCACTCTTCCAGTCCCAACCTCTTCTTCAGGCCCACAAACCCATGGTCTATGACTACTCATATGCATCATCTCTGCCTTCAGAGCCTCCTGTCACAGTGAAGCAGCTCATGACAAACCCTAGAGACTGTGAGAGTGGCAGCGATGGTCTGAGATACCAAGTTTCAGAATCAGGCATGGAAGTTGGCTCTTGTGAACCACCTCAAGATATTGGTGCAGGAAGAGGTGAAGGAATGAACGAATGGGGTGTGCTTGATAGGCTAGTGACCCCTCATCTTGGAAACCAAGACTCAACCAAAGGGGTCAGATTTGATGATGCGAATCCACAGTCTGTGCACCAGCTTTCATTGCGGGGAGAGATGGACTTTTGGGGCTATGGAAAACAATGA 1059 0.4589 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNDWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQGNTDEDGWVVCRVFKKKNLFKIGNEGGSTHNQEQQINDSFMHRENQYLLPQQQNTRNLSSGFELDKPELALHYPHLQNPQYSLFQSQPLLQAHKPMVYDYSYASSLPSEPPVTVKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPPQDIGAGRGEGMNEWGVLDRLVTPHLGNQDSTKGVRFDDANPQSVHQLSLRGEMDFWGYGKQ* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00056 352 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Rops3g00056 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 214 - -
Rops3g00056 352 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Rops3g00056 352 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Rops3g00056 352 FunFam NAC domain-containing protein 17 163 - -
Rops3g00056 352 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00056 Rops-Chr3 778833 781218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00056 1 348 NAC Transcription Factor Family AT1G33280 55.899 1.07e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g00056 NAM 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00056 - - gmx:100804181 640.188