Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00055 ATGGTGGTCAACGAGAGACCCTCGAAGAGGATGAAGAGGAGGGTCACTGCCGATCTCTATGATTTTCTCACTTTCCCCGCCGCCGGAGATGTCTCCTCCGGCGGATCCTTCCGAAACTGTGTTCAAAGCTTTCTCTCCGACCACGCGCGCATCACTTTCCCTCCTTCGCTCTTTCCATCACTCATGACGTGGCAGATCTTGTTCCGTGTTGGTGACCTCATCGATCTCTCCCCGGCCATGGTCACTCTCGACATTGTCGAAGAGGACGTCCCTCGTTCTCGTAGTTCTGTCTATTGTGACCAGTGCCGAGTCGTTGGATGGAGTGGGCATCCGGTGTGTCGAAAGAGATACCATTTCATAATAAGGGCGGCAAGTAATGCCATTGAAGCATATCAAAGACCTTGTTCAAGATGTGGAAGTCTTCTTGGGTTATCTGAACCAAGGTGTAAATCATGTGATTTTGCTATTACGGTTGATGATATTGAGGATTGGGTGGATCTTCAGATTGAAGATAACACACATCTTCTGCATGGTGTTGTCCATGCCAATGGTTATGGTCACCTTCTTACTCTTAATGGAAGAGAAGGTGGCTCGAAACTTCTATCTGGATCTGATATTATGGGTTTCTGGGATAGGCTATGTGCTGCAATTTCTGTCAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATATCGATTGCTTCATGCAGTCACCAACGGACATTCCTGGTATGGCAATTGGGATTATGAATTTGGAACCGGGAGCTATGCTCTTACCCAGGATGCGTACAAGAAGGCAGTGAATACCTTGTCAAGCATGCCCTTGTCGTCGTTTTTATTTCAGGGTCGAGGACCACAAAACCGAATGCAACGTCTCATTTCTCTTTACCAGTCTTTGGCAGACACTGAACTTCTAACAATTAAAGATCTCTTCTCCTTTTTGTTGACTTTGGTTCATGAATTTCGTAAGCCCATGACCATGGAGACATCTAAACAGCTTGAATACACTAGTACATGTAATTTATTATGTGCTTGGACGAGAAGTGATGTTGAAGATGTGCAACGGATTTTGATCAAGGTATTGCTTGCATCGGGTGCCTTTACTGAGGCCAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCTGTATGCAGTGGTGTTGCATCTCCAGAGCTTCTAGACTACAGTCTGAAGTACTTACCAGGGAAATTAGCTGCCAATGGACTGGTAGTTTGTTCACGATGCAATCCCAAATCTAGTGCTATCGAATTCAGGCTGGCACCTCCATGTGATGGACTTAAAGCAAATTCAAGCTATCCGTCAGAAGAGCAAGTGATCTCTGACTTGACATTCTTATTTAATTCAATTATCCACCCTGACAAAATGGTGAGCTACCGACCCAAGATAATGAGGAAAAGGGTGGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAGCAGTTTATGAAGGATTACAAGCCGGATCAAATGACTGAAGAACTGCCTTCAGTCATTCGACTGTGGTGTCATGTGGAGCTTTCCGATCAGCCTAAAGATGATCCATCCCCACCGCCGGAGCTAATTGTGTTGCCTTTGAATGCTACTGTCGCTGACCTTAAGAATGAAGCCACCAGTGCTTTCCAAGAGGTATATGCGATGTACAAGAGGTTTCAAGCTGAGGAACTCCTAGGATATGGGACAATAAGTGATTTGCTCACCGTAAAATTCCTGCTTGGCACAAGTGGATCAGTGCGAATTCAAGGGAGATGCCCAGCCAAACATGGGCTGAACCGATTCCGAATGGAACGAGGAACAGAGGTGTGGAAAGTTGATTGCACTTGTGGGGCAAAGGATGATGATGGAGAAAGAATGTTAGCATGTGACACTTGTGGCATTTGGCAGCATACCAGATGTGCTGGAATTGATAATACAGATGGCATGCCTTCCAAGTTTGTATGTATGAGATGCGTTAATTCGTTTCGCAAGGAAACAAAAAAACTACCGGATTCTGACGGGGAAGCTAACAAAGCTTGTAAATTTAACACATCTTGCAGAGATGAAGCGGTGGTAAAAGACTGCGCAGCCGTTGCTTGTAACATAACTGTAAATTTTGGTGTGCGTTGA 2130 0.4559 MVVNERPSKRMKRRVTADLYDFLTFPAAGDVSSGGSFRNCVQSFLSDHARITFPPSLFPSLMTWQILFRVGDLIDLSPAMVTLDIVEEDVPRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAIEAYQRPCSRCGSLLGLSEPRCKSCDFAITVDDIEDWVDLQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAVTNGHSWYGNWDYEFGTGSYALTQDAYKKAVNTLSSMPLSSFLFQGRGPQNRMQRLISLYQSLADTELLTIKDLFSFLLTLVHEFRKPMTMETSKQLEYTSTCNLLCAWTRSDVEDVQRILIKVLLASGAFTEAKWVTRRALKGAVCSGVASPELLDYSLKYLPGKLAANGLVVCSRCNPKSSAIEFRLAPPCDGLKANSSYPSEEQVISDLTFLFNSIIHPDKMVSYRPKIMRKRVADSARKLLDCKQFMKDYKPDQMTEELPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVADLKNEATSAFQEVYAMYKRFQAEELLGYGTISDLLTVKFLLGTSGSVRIQGRCPAKHGLNRFRMERGTEVWKVDCTCGAKDDDGERMLACDTCGIWQHTRCAGIDNTDGMPSKFVCMRCVNSFRKETKKLPDSDGEANKACKFNTSCRDEAVVKDCAAVACNITVNFGVR* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00055 709 Pfam PHD-finger 614 660 IPR019787 -
Rops3g00055 709 ProSitePatterns Zinc finger PHD-type signature. 614 658 IPR019786 -
Rops3g00055 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 664 IPR013083 -
Rops3g00055 709 SMART PHD_3 613 659 IPR001965 -
Rops3g00055 709 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 668 - -
Rops3g00055 709 ProSitePatterns Uncharacterized protein family UPF0054 signature. 177 187 IPR020549 -
Rops3g00055 709 SUPERFAMILY FYVE/PHD zinc finger 604 662 IPR011011 -
Rops3g00055 709 CDD PHD_MMD1_like 613 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00055 Rops-Chr3 765805 769115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00055 77 658 PHD Transcription Factor Family AT5G22260 29.173 6.78e-83 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops3g00055 PHD 4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00055 K26271 - gmx:100780558 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00055 3 765805 769115 Rops3g00055 3 765805 769115 ECH