Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00052 ATGTCCAAGACAGAGCAAGCTCAAAGCAGTGCACCCTCAAAACGGGGCTCCAGGAAGCGAGAGTCAACAACATTCCATGGAGTGCGCAAACGCAGCTGGGGACGATATGTCTCAGAGATAAGGTTACCGGGTCAGAAAACCCGGATATGGCTCGGGTCATTCGGGTCAGCTGAAATGGCTGCTCGTGCATATGACTCAGCAGCTTTCTTCTTGAAAGGAAGCTCTGCCAGCCTTAATTTTCCGGAGCTGGTTGAGTCGCTGCCTCGCCCTCTCTCTTCCTCAAGAAGAGACATTCAATCCGCGGCTGCTAAAGCGGCTCTTCACCTTCCATCATCTTCTCCAAAAGCACATCATCATGATTCCGTGGAGATGGAGTTGTGGGATCAGTTGGGAGAAGACTCCCTTTGTACGACGTCGTTTGAGGATGGGAAAGATGCTCCTCTTAGGGTGGGCTCCACTTTTGGAGATTTGACATGGAACGAAGTTTTCAATTTCAATTTCAATGATGACATTCTCCTCAACATCGCATCTCTTTAG 537 0.4953 MSKTEQAQSSAPSKRGSRKRESTTFHGVRKRSWGRYVSEIRLPGQKTRIWLGSFGSAEMAARAYDSAAFFLKGSSASLNFPELVESLPRPLSSSRRDIQSAAAKAALHLPSSSPKAHHHDSVEMELWDQLGEDSLCTTSFEDGKDAPLRVGSTFGDLTWNEVFNFNFNDDILLNIASL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00052 178 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Rops3g00052 178 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Rops3g00052 178 MobiDBLite consensus disorder prediction 1 26 - -
Rops3g00052 178 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Rops3g00052 178 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Rops3g00052 178 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Rops3g00052 178 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Rops3g00052 178 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Rops3g00052 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 119 - -
Rops3g00052 178 Pfam AP2 domain 25 73 IPR001471 GO:0003700|GO:0006355
Rops3g00052 178 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00052 Rops-Chr3 744107 744643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00052 3 110 AP2-EREBP Transcription Factor Family AT5G11590 54.630 4.39e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g00052 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00052 K09286 - gmx:100783790 184.882